library(multiMiR)
## Welcome to multiMiR.
## 
## multiMiR database URL has been set to the 
## default value: http://multimir.org/
## 
## Database Version: 2.3.0  Updated: 2020-04-15
library(clusterProfiler)
## 
## clusterProfiler v4.12.2 Learn more at https://yulab-smu.top/contribution-knowledge-mining/
## 
## Please cite:
## 
## S Xu, E Hu, Y Cai, Z Xie, X Luo, L Zhan, W Tang, Q Wang, B Liu, R Wang,
## W Xie, T Wu, L Xie, G Yu. Using clusterProfiler to characterize
## multiomics data. Nature Protocols. 2024, doi:10.1038/s41596-024-01020-z
## 
## Attaching package: 'clusterProfiler'
## The following object is masked from 'package:multiMiR':
## 
##     select
## The following object is masked from 'package:stats':
## 
##     filter
library(org.Hs.eg.db)
## Loading required package: AnnotationDbi
## Loading required package: stats4
## Loading required package: BiocGenerics
## 
## Attaching package: 'BiocGenerics'
## The following objects are masked from 'package:stats':
## 
##     IQR, mad, sd, var, xtabs
## The following objects are masked from 'package:base':
## 
##     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
##     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
##     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
##     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
##     Position, rank, rbind, Reduce, rownames, sapply, setdiff, table,
##     tapply, union, unique, unsplit, which.max, which.min
## Loading required package: Biobase
## Welcome to Bioconductor
## 
##     Vignettes contain introductory material; view with
##     'browseVignettes()'. To cite Bioconductor, see
##     'citation("Biobase")', and for packages 'citation("pkgname")'.
## Loading required package: IRanges
## Loading required package: S4Vectors
## 
## Attaching package: 'S4Vectors'
## The following object is masked from 'package:clusterProfiler':
## 
##     rename
## The following object is masked from 'package:utils':
## 
##     findMatches
## The following objects are masked from 'package:base':
## 
##     expand.grid, I, unname
## 
## Attaching package: 'IRanges'
## The following object is masked from 'package:clusterProfiler':
## 
##     slice
## The following object is masked from 'package:grDevices':
## 
##     windows
## 
## Attaching package: 'AnnotationDbi'
## The following object is masked from 'package:clusterProfiler':
## 
##     select
## 
library(stringr)
library(ggplot2)

0. Loading of Results

A. List of all Gene names in the dataset

gene.names = readRDS("data/derived/unique_gene_names.rds")

B. Selected Features

Due to long computational time to obtain gene names for microRNA and to execute pathway analysis,

pathway analysis will only be done for 1, 2, 3, 5 and 10-bicluster FABIA.

results.fabia = readRDS("data/sel_features/results_fabia_extracted_by_bic.rds")
sel.features = results.fabia[1:5]
sel.features
## $`1bc`
## $`1bc`$bicluster1
##      G6PD.RPPA      TGM2.R2Gn hsa-mir-1185-1 hsa-mir-1185-2   hsa-mir-1197 
##     -0.5664688     -0.5495991      0.7662391      0.6351004      0.6196432 
##    hsa-mir-127    hsa-mir-134    hsa-mir-136    hsa-mir-154    hsa-mir-299 
##      0.5556598      0.5553999      0.5555263      0.5772620      0.5401860 
##    hsa-mir-323   hsa-mir-323b  hsa-mir-329-1  hsa-mir-329-2    hsa-mir-337 
##      0.5936458      0.6038210      0.6858061      0.6838698      0.4938656 
##    hsa-mir-369    hsa-mir-370 hsa-mir-376a-1 hsa-mir-376a-2   hsa-mir-376b 
##      0.5261986      0.5848124      0.5874765      0.6262681      0.5265671 
##   hsa-mir-376c    hsa-mir-377    hsa-mir-379    hsa-mir-380    hsa-mir-381 
##      0.5575709      0.6136535      0.5312722      0.6782381      0.5273689 
##    hsa-mir-382    hsa-mir-409    hsa-mir-410    hsa-mir-411    hsa-mir-412 
##      0.5608688      0.5577673      0.5278594      0.6712205      0.4479444 
##    hsa-mir-431    hsa-mir-432    hsa-mir-433    hsa-mir-485   hsa-mir-487a 
##      0.5105189      0.5210694      0.6026199      0.6385659      0.7267015 
##   hsa-mir-487b    hsa-mir-493    hsa-mir-494    hsa-mir-495    hsa-mir-496 
##      0.5397963      0.4263443      0.6434824      0.5006743      0.5717559 
##   hsa-mir-517a    hsa-mir-539    hsa-mir-541    hsa-mir-543    hsa-mir-654 
##     -0.5002749      0.5285802      0.6543345      0.6088287      0.5726739 
##    hsa-mir-655    hsa-mir-656    hsa-mir-665    hsa-mir-668    hsa-mir-758 
##      0.6905221      0.8365020      0.5754425      0.6625089      0.5231312 
##    hsa-mir-770    hsa-mir-889 
##      0.6163359      0.5576494 
## 
## 
## $`2bc`
## $`2bc`$bicluster2
##      G6PD.RPPA     RBM15.RPPA      FASN.RPPA      TTF1.RPPA       VHL.RPPA 
##     -0.4947514      0.3795670      0.5768981     -0.4377838     -0.3772156 
##      TGM2.R2Gn    SQSTM1.R2Gn hsa-mir-1185-1 hsa-mir-1185-2   hsa-mir-1193 
##     -0.5100910     -0.4078596      0.5594705      0.4696187      0.3940719 
##   hsa-mir-1197   hsa-mir-1258    hsa-mir-127    hsa-mir-134    hsa-mir-136 
##      0.4989459     -0.3781580      0.4464493      0.4475944      0.4489271 
##    hsa-mir-154    hsa-mir-299    hsa-mir-323   hsa-mir-323b  hsa-mir-329-1 
##      0.4516122      0.4297408      0.4716776      0.4642313      0.5510674 
##  hsa-mir-329-2    hsa-mir-337    hsa-mir-369    hsa-mir-370 hsa-mir-376a-1 
##      0.6231958      0.4337406      0.4375161      0.4669418      0.4945849 
## hsa-mir-376a-2   hsa-mir-376b   hsa-mir-376c    hsa-mir-377    hsa-mir-379 
##      0.4993865      0.4425174      0.4439293      0.4885167      0.4269243 
##    hsa-mir-380    hsa-mir-381    hsa-mir-382    hsa-mir-409    hsa-mir-410 
##      0.5553450      0.4251795      0.4438641      0.4433247      0.4366585 
##    hsa-mir-411    hsa-mir-412    hsa-mir-431    hsa-mir-432    hsa-mir-433 
##      0.4690795      0.4240978      0.4598986      0.4625162      0.4727682 
##    hsa-mir-466    hsa-mir-485   hsa-mir-487a   hsa-mir-487b    hsa-mir-493 
##     -0.4874996      0.4465527      0.5465899      0.4492726      0.4061574 
##    hsa-mir-494    hsa-mir-495    hsa-mir-496    hsa-mir-506    hsa-mir-507 
##      0.4714333      0.3996444      0.4620112     -0.5175712     -0.5847532 
##    hsa-mir-508  hsa-mir-509-1  hsa-mir-509-2  hsa-mir-509-3    hsa-mir-510 
##     -0.5014800     -0.4582238     -0.4606885     -0.4641817     -0.7000950 
## hsa-mir-513a-1 hsa-mir-513a-2   hsa-mir-513b   hsa-mir-513c  hsa-mir-514-1 
##     -0.5146970     -0.5416414     -0.4808000     -0.4772028     -0.5008222 
##  hsa-mir-514-2  hsa-mir-514-3   hsa-mir-514b   hsa-mir-517a    hsa-mir-539 
##     -0.5045772     -0.5027646     -0.4337189     -0.3707787      0.4324968 
##    hsa-mir-541    hsa-mir-543    hsa-mir-605    hsa-mir-654    hsa-mir-655 
##      0.5403953      0.4310786     -0.4237129      0.4606440      0.5126972 
##    hsa-mir-656    hsa-mir-665    hsa-mir-668    hsa-mir-758    hsa-mir-770 
##      0.6667496      0.5263446      0.5101166      0.4220787      0.5519820 
##    hsa-mir-889 
##      0.4446168 
## 
## $`2bc`$bicluster1
##       FN1.R2Gn    CTNNB1.R2Gn     CCND1.R2Gn hsa-mir-1185-1 hsa-mir-1185-2 
##     -0.4511588     -0.4925327     -0.4626447      0.5297352      0.4314716 
##   hsa-mir-135b    hsa-mir-206   hsa-mir-3166 hsa-mir-3199-1   hsa-mir-323b 
##     -0.3906779     -0.4583481     -0.4034852      0.4173045      0.3852651 
##  hsa-mir-329-1 hsa-mir-376a-2    hsa-mir-380   hsa-mir-3923    hsa-mir-411 
##      0.4048227      0.3728961      0.3843573     -0.3936415      0.4946514 
##    hsa-mir-433    hsa-mir-485   hsa-mir-487a    hsa-mir-494    hsa-mir-506 
##      0.3724767      0.4700524      0.4803354      0.4429761      0.4240878 
##    hsa-mir-507    hsa-mir-508  hsa-mir-509-1  hsa-mir-509-2  hsa-mir-509-3 
##      0.5126687      0.4074888      0.4327297      0.4354988      0.4239098 
##    hsa-mir-510 hsa-mir-513a-1 hsa-mir-513a-2  hsa-mir-514-1  hsa-mir-514-2 
##      0.5448665      0.3938817      0.4365787      0.4445967      0.4491853 
##  hsa-mir-514-3   hsa-mir-514b    hsa-mir-543    hsa-mir-655    hsa-mir-656 
##      0.4515958      0.4196900      0.4407581      0.4666229      0.4984523 
##    hsa-mir-668 
##      0.4212441 
## 
## 
## $`3bc`
## $`3bc`$bicluster2
##      G6PD.RPPA      FASN.RPPA      TGM2.R2Gn hsa-mir-1185-1   hsa-mir-1197 
##     -0.6514624      0.8737953     -0.7011726      0.7013345      0.6522884 
##  hsa-mir-329-1  hsa-mir-329-2 hsa-mir-376a-2    hsa-mir-380    hsa-mir-466 
##      0.7064830      0.8107564      0.6617729      0.7212568     -0.6553467 
##   hsa-mir-487a    hsa-mir-506    hsa-mir-507    hsa-mir-508  hsa-mir-509-3 
##      0.7015375     -0.7206063     -0.8075650     -0.6905181     -0.6404349 
##    hsa-mir-510 hsa-mir-513a-1 hsa-mir-513a-2   hsa-mir-513b   hsa-mir-513c 
##     -0.9915946     -0.7202971     -0.7574027     -0.6739789     -0.6583085 
##  hsa-mir-514-1  hsa-mir-514-2  hsa-mir-514-3    hsa-mir-541    hsa-mir-605 
##     -0.7000274     -0.7049369     -0.7023947      0.7012658     -0.6444571 
##    hsa-mir-655    hsa-mir-656    hsa-mir-665    hsa-mir-668    hsa-mir-770 
##      0.6524373      0.8623823      0.6826397      0.6457786      0.7249692 
## 
## $`3bc`$bicluster3
##     GATA3.RPPA    IGFBP2.R2Gn       FN1.R2Gn    CTNNB1.R2Gn     CCND1.R2Gn 
##     -0.9248231     -0.6582546     -0.8641139     -0.9724582     -0.9043804 
## hsa-mir-1185-1  hsa-mir-124-3   hsa-mir-135b    hsa-mir-206   hsa-mir-2114 
##      0.6907430     -0.7375579     -0.6885645     -0.8045228      0.9326673 
##   hsa-mir-3166 hsa-mir-3199-1   hsa-mir-3655   hsa-mir-3923 hsa-mir-3926-2 
##     -0.7932514      0.8070724      0.7332915     -0.7798807      0.7178644 
##    hsa-mir-411    hsa-mir-485   hsa-mir-487a    hsa-mir-506    hsa-mir-507 
##      0.6875457      0.6667901      0.6462570      1.0799827      1.3110639 
##    hsa-mir-508  hsa-mir-509-1  hsa-mir-509-2  hsa-mir-509-3    hsa-mir-510 
##      1.0634858      1.1021953      1.1088305      1.0805202      1.3487461 
## hsa-mir-513a-1 hsa-mir-513a-2   hsa-mir-513b   hsa-mir-513c  hsa-mir-514-1 
##      1.0030912      1.1041617      0.9312010      0.9159748      1.1088941 
##  hsa-mir-514-2  hsa-mir-514-3   hsa-mir-514b    hsa-mir-582 
##      1.1209338      1.1254595      1.0572493     -0.6426409 
## 
## $`3bc`$bicluster1
##      G6PD.RPPA     ERBB3.R2Gn       FN1.R2Gn      CDH2.R2Gn    CTNNB1.R2Gn 
##     -0.7822392      0.6635589     -0.8509824     -0.6757206     -0.9033705 
##      TGM2.R2Gn     CCND1.R2Gn hsa-mir-1185-1 hsa-mir-1185-2   hsa-mir-1197 
##     -0.6468656     -0.8457685      1.3503645      1.1107468      0.9529190 
##   hsa-mir-1269    hsa-mir-127 hsa-mir-1270-2    hsa-mir-134   hsa-mir-135b 
##     -0.8010780      0.8771463      0.6597144      0.8552275     -0.7632553 
##    hsa-mir-136    hsa-mir-154    hsa-mir-206    hsa-mir-299   hsa-mir-3144 
##      0.8799115      0.9404601     -0.9422025      0.8557165     -0.6628892 
##   hsa-mir-3166 hsa-mir-3199-1    hsa-mir-323   hsa-mir-323b  hsa-mir-329-1 
##     -0.7309786      0.7773116      0.9517043      1.0090382      1.0896878 
##  hsa-mir-329-2    hsa-mir-337   hsa-mir-3655    hsa-mir-369    hsa-mir-370 
##      0.9268612      0.7072687      0.6453038      0.7971572      0.9256967 
## hsa-mir-376a-1 hsa-mir-376a-2   hsa-mir-376b   hsa-mir-376c    hsa-mir-377 
##      0.8889023      0.9533043      0.7822999      0.8807044      0.9724277 
##    hsa-mir-379    hsa-mir-380    hsa-mir-381    hsa-mir-382   hsa-mir-3923 
##      0.8279896      1.0380931      0.8185154      0.9003822     -0.6993006 
##    hsa-mir-409    hsa-mir-410    hsa-mir-411    hsa-mir-431    hsa-mir-432 
##      0.8873264      0.8137013      1.2199026      0.7062762      0.7375277 
##    hsa-mir-433    hsa-mir-485   hsa-mir-487a   hsa-mir-487b    hsa-mir-494 
##      1.0121041      1.1513445      1.2182208      0.8302603      1.0982661 
##    hsa-mir-495    hsa-mir-496    hsa-mir-510   hsa-mir-517a   hsa-mir-520a 
##      0.7997866      0.9103087      0.6889123     -0.9189714     -0.6468570 
##    hsa-mir-539    hsa-mir-541    hsa-mir-543    hsa-mir-577    hsa-mir-654 
##      0.8272746      0.9954855      1.0942886     -0.6592411      0.9080437 
##    hsa-mir-655    hsa-mir-656    hsa-mir-665    hsa-mir-668    hsa-mir-758 
##      1.1825263      1.3173936      0.7805161      1.1096351      0.8120464 
##    hsa-mir-770    hsa-mir-889 
##      0.8385361      0.8914403 
## 
## 
## $`5bc`
## $`5bc`$bicluster2
##      G6PD.RPPA      FASN.RPPA    INPP4B.RPPA      TTF1.RPPA     PRDX1.RPPA 
##     -1.2236772      1.2175965     -0.9125127     -0.8930760     -0.8458281 
##      G6PD.R2Gn      TGM2.R2Gn    SQSTM1.R2Gn hsa-mir-1185-1 hsa-mir-1185-2 
##     -0.7505276     -1.2716219     -1.0736112      1.5702475      1.2947252 
##   hsa-mir-1193   hsa-mir-1197    hsa-mir-127    hsa-mir-134    hsa-mir-136 
##      0.7893111      1.3379374      1.1731776      1.1993515      1.1603324 
##   hsa-mir-146a    hsa-mir-154    hsa-mir-299    hsa-mir-323   hsa-mir-323b 
##     -0.7559942      1.2107862      1.1458929      1.2456081      1.2538499 
##  hsa-mir-329-1  hsa-mir-329-2    hsa-mir-337    hsa-mir-369    hsa-mir-370 
##      1.4334220      1.4452910      1.0382505      1.1167849      1.2367825 
## hsa-mir-376a-1 hsa-mir-376a-2   hsa-mir-376b   hsa-mir-376c    hsa-mir-377 
##      1.2280260      1.3883613      1.1254736      1.1854181      1.2979233 
##    hsa-mir-379    hsa-mir-380    hsa-mir-381    hsa-mir-382    hsa-mir-409 
##      1.1367002      1.4499531      1.1303332      1.1801769      1.1794923 
##    hsa-mir-410    hsa-mir-411    hsa-mir-412    hsa-mir-431    hsa-mir-432 
##      1.1086159      1.3895000      0.9442754      1.0811420      1.1018494 
##    hsa-mir-433    hsa-mir-485   hsa-mir-487a   hsa-mir-487b    hsa-mir-489 
##      1.2215302      1.3373563      1.5385568      1.1265769     -0.8030745 
##    hsa-mir-493    hsa-mir-494    hsa-mir-495    hsa-mir-496 hsa-mir-516a-2 
##      0.8897820      1.3707919      1.0551570      1.1845408     -0.7887044 
## hsa-mir-516b-1   hsa-mir-517a   hsa-mir-518b   hsa-mir-518f    hsa-mir-539 
##     -0.7797897     -0.9432788     -0.9193731     -0.7734725      1.1034908 
##    hsa-mir-541    hsa-mir-543    hsa-mir-577    hsa-mir-605    hsa-mir-653 
##      1.3977499      1.2640158     -0.8255819     -0.7621934     -0.7819097 
##    hsa-mir-654    hsa-mir-655    hsa-mir-656    hsa-mir-665    hsa-mir-668 
##      1.1978980      1.4462898      1.7742395      1.2096247      1.3677798 
##    hsa-mir-758    hsa-mir-770    hsa-mir-876    hsa-mir-889 
##      1.1177636      1.3295061     -0.8135486      1.1703091 
## 
## $`5bc`$bicluster5
##      FASN.RPPA       FN1.R2Gn    CTNNB1.R2Gn     CCND1.R2Gn   hsa-mir-1258 
##      0.7530785      0.7782749      0.9789055      0.9398745     -0.8778078 
##   hsa-mir-135b   hsa-mir-2114   hsa-mir-3166 hsa-mir-3199-1   hsa-mir-3923 
##      0.7789183     -0.9474872      0.8217578     -0.8002071      0.7653353 
## hsa-mir-3926-2    hsa-mir-506    hsa-mir-507    hsa-mir-508  hsa-mir-509-1 
##     -0.8642790     -1.2810821     -1.5268068     -1.2511387     -1.2461806 
##  hsa-mir-509-2  hsa-mir-509-3    hsa-mir-510 hsa-mir-513a-1 hsa-mir-513a-2 
##     -1.2536204     -1.2361909     -1.6619289     -1.2442761     -1.3369888 
##   hsa-mir-513b   hsa-mir-513c  hsa-mir-514-1  hsa-mir-514-2  hsa-mir-514-3 
##     -1.1415689     -1.1019043     -1.2999527     -1.3123096     -1.3144639 
##   hsa-mir-514b 
##     -1.2016029 
## 
## $`5bc`$bicluster1
##      G6PD.RPPA      FASN.RPPA      TSC1.RPPA      TTF1.RPPA     ERBB3.R2Gn 
##     -1.0238172      1.1176535      0.7533710     -0.9323751      0.8437467 
##    IGFBP2.R2Gn      TGM2.R2Gn hsa-mir-1185-1 hsa-mir-1185-2   hsa-mir-1193 
##      0.8312737     -0.9804476      1.2901309      1.0712054      0.9809614 
##   hsa-mir-1197   hsa-mir-1258    hsa-mir-127    hsa-mir-134    hsa-mir-136 
##      1.1234606     -0.7732690      1.0133654      0.9826379      1.0258456 
##    hsa-mir-154   hsa-mir-2114    hsa-mir-299    hsa-mir-323   hsa-mir-323b 
##      1.0244611     -0.8959236      0.9620621      1.0774052      1.0690317 
##  hsa-mir-329-1  hsa-mir-329-2    hsa-mir-337    hsa-mir-369    hsa-mir-370 
##      1.2415553      1.4152582      1.0024046      0.9954036      1.0457143 
## hsa-mir-376a-1 hsa-mir-376a-2   hsa-mir-376b   hsa-mir-376c    hsa-mir-377 
##      1.1483753      1.0982166      1.0067403      0.9922984      1.0785131 
##    hsa-mir-379    hsa-mir-380    hsa-mir-381    hsa-mir-382   hsa-mir-3909 
##      0.9567081      1.2575862      0.9574238      1.0033507     -0.7688510 
##   hsa-mir-3922    hsa-mir-409    hsa-mir-410    hsa-mir-411    hsa-mir-412 
##     -0.8133562      0.9986470      1.0242300      1.0572472      1.0263366 
##    hsa-mir-431    hsa-mir-432    hsa-mir-433    hsa-mir-466    hsa-mir-485 
##      1.0854882      1.0919553      1.1385319     -1.1586721      1.0072154 
##   hsa-mir-487a   hsa-mir-487b    hsa-mir-493    hsa-mir-494    hsa-mir-495 
##      1.2100117      1.0434050      0.9975330      1.0341061      0.9199375 
##    hsa-mir-496    hsa-mir-506    hsa-mir-507    hsa-mir-508  hsa-mir-509-1 
##      1.0701750     -1.2031645     -1.3575097     -1.1717016     -1.0952425 
##  hsa-mir-509-2  hsa-mir-509-3    hsa-mir-510 hsa-mir-513a-1 hsa-mir-513a-2 
##     -1.1009373     -1.1005052     -1.5802550     -1.1577940     -1.2391731 
##   hsa-mir-513b   hsa-mir-513c  hsa-mir-514-1  hsa-mir-514-2  hsa-mir-514-3 
##     -1.0945976     -1.1089469     -1.1644768     -1.1737918     -1.1710175 
##   hsa-mir-514b   hsa-mir-517a    hsa-mir-539    hsa-mir-541    hsa-mir-543 
##     -1.0171652     -0.8674700      0.9944405      1.2455268      0.9873862 
##    hsa-mir-585    hsa-mir-605    hsa-mir-654    hsa-mir-655    hsa-mir-656 
##     -0.7452833     -0.8457441      1.0464010      1.1422255      1.4811616 
##    hsa-mir-665    hsa-mir-668    hsa-mir-758    hsa-mir-770    hsa-mir-889 
##      1.1873457      1.1938936      0.9484045      1.2372062      1.0166875 
## 
## $`5bc`$bicluster4
##      G6PD.RPPA    IGFBP2.R2Gn       FN1.R2Gn     CCND1.R2Gn hsa-mir-1185-1 
##     -0.8874401     -0.7458151     -0.9565017     -0.8364112      0.9376338 
## hsa-mir-1185-2   hsa-mir-1269   hsa-mir-2114   hsa-mir-3923    hsa-mir-411 
##      0.7793299     -0.8862766      0.7511895     -0.9393513      0.8631381 
##    hsa-mir-485   hsa-mir-487a    hsa-mir-494    hsa-mir-507  hsa-mir-509-2 
##      0.8206766      0.8626403      0.7885223      0.8805492      0.7465243 
##    hsa-mir-510  hsa-mir-514-1  hsa-mir-514-2  hsa-mir-514-3    hsa-mir-543 
##      1.0051334      0.7706746      0.7793074      0.7834490      0.7556145 
##    hsa-mir-655    hsa-mir-656 
##      0.8555369      0.8747549 
## 
## $`5bc`$bicluster3
##      TGM2.R2Gn hsa-mir-1185-1 hsa-mir-1185-2   hsa-mir-1197  hsa-mir-329-1 
##     -0.9917658      0.9119355      0.8179147      0.7677908      0.9301956 
##  hsa-mir-329-2    hsa-mir-380    hsa-mir-411    hsa-mir-485   hsa-mir-487a 
##      0.8555830      0.7912598      0.8515268      0.7494611      0.8980823 
##    hsa-mir-494 hsa-mir-516a-1 hsa-mir-516a-2 hsa-mir-516b-1   hsa-mir-517a 
##      0.7818349     -1.0238960     -0.8652304     -0.8930039     -1.1226980 
##   hsa-mir-518b hsa-mir-519a-2   hsa-mir-520a    hsa-mir-541    hsa-mir-655 
##     -0.9249284     -0.7535023     -0.7649585      0.8239600      0.8520211 
##    hsa-mir-656    hsa-mir-668 
##      1.0533879      0.8401613 
## 
## 
## $`10bc`
## $`10bc`$bicluster9
##      G6PD.RPPA     BRCA2.RPPA      FASN.RPPA    INPP4B.RPPA      TTF1.RPPA 
##     -1.4627449     -0.6720120      1.4086631     -0.9694645     -1.0291156 
##       VHL.RPPA     PRDX1.RPPA      G6PD.R2Gn       MET.R2Gn      FASN.R2Gn 
##     -0.8444524     -0.9069342     -0.7844535     -0.7018710      0.8476400 
##      TGM2.R2Gn       PXN.R2Gn    SQSTM1.R2Gn hsa-mir-1185-1 hsa-mir-1185-2 
##     -1.5283431     -0.8027402     -1.1032195      1.6309261      1.3876480 
##   hsa-mir-1193   hsa-mir-1197   hsa-mir-1258   hsa-mir-1269    hsa-mir-127 
##      0.8020527      1.2937363     -0.8044344     -0.6902691      1.2667368 
##    hsa-mir-134    hsa-mir-136   hsa-mir-146a  hsa-mir-153-1    hsa-mir-154 
##      1.3017638      1.2877023     -0.8260444      0.6820200      1.3062989 
## hsa-mir-196a-2    hsa-mir-205   hsa-mir-216b    hsa-mir-224    hsa-mir-299 
##      0.6992002     -0.6726063     -0.8044338     -0.6744452      1.2341408 
##    hsa-mir-323   hsa-mir-323b  hsa-mir-329-1  hsa-mir-329-2    hsa-mir-337 
##      1.3127688      1.3204813      1.5222314      1.6527292      1.1081292 
##    hsa-mir-369    hsa-mir-370 hsa-mir-376a-1 hsa-mir-376a-2   hsa-mir-376b 
##      1.2098575      1.3405041      1.2791011      1.3927794      1.1857192 
##   hsa-mir-376c    hsa-mir-377    hsa-mir-379    hsa-mir-380    hsa-mir-381 
##      1.2531794      1.4120112      1.2195716      1.5192193      1.2101664 
##    hsa-mir-382    hsa-mir-409    hsa-mir-410    hsa-mir-411    hsa-mir-412 
##      1.2535639      1.2593438      1.1442277      1.4901016      0.9761255 
##    hsa-mir-431    hsa-mir-432    hsa-mir-433    hsa-mir-452    hsa-mir-466 
##      1.0949832      1.1301866      1.2224315     -0.7313466     -0.9866312 
##    hsa-mir-485   hsa-mir-487a   hsa-mir-487b    hsa-mir-489    hsa-mir-493 
##      1.3799050      1.6292465      1.2048440     -0.9158299      0.8832365 
##    hsa-mir-494    hsa-mir-495    hsa-mir-496    hsa-mir-506    hsa-mir-507 
##      1.4199328      1.1353186      1.2582445     -0.7289618     -0.7921094 
##    hsa-mir-508    hsa-mir-510 hsa-mir-513a-1 hsa-mir-513a-2   hsa-mir-513b 
##     -0.7055852     -1.0598608     -0.8244325     -0.7984791     -0.7538948 
##   hsa-mir-513c  hsa-mir-514-1  hsa-mir-514-2 hsa-mir-516a-2   hsa-mir-517a 
##     -0.7275371     -0.6722299     -0.6769592     -0.7533639     -0.8643008 
##   hsa-mir-518b   hsa-mir-518f   hsa-mir-520a    hsa-mir-539    hsa-mir-541 
##     -0.9086687     -0.7165163     -0.6894122      1.1965685      1.3723089 
##    hsa-mir-543   hsa-mir-548v    hsa-mir-577    hsa-mir-605    hsa-mir-615 
##      1.2839268     -0.8060584     -0.9002252     -0.8701715      0.7216102 
##    hsa-mir-653    hsa-mir-654    hsa-mir-655    hsa-mir-656    hsa-mir-665 
##     -0.8396767      1.2977646      1.5886964      1.8944918      1.4228691 
##    hsa-mir-668    hsa-mir-758    hsa-mir-770    hsa-mir-873    hsa-mir-876 
##      1.3355796      1.1825793      1.4453960     -0.8171277     -1.2519276 
##    hsa-mir-889 
##      1.2449389 
## 
## $`10bc`$bicluster10
##      G6PD.RPPA     RBM15.RPPA      FASN.RPPA      TSC1.RPPA      TTF1.RPPA 
##      0.7502456     -0.7800365     -1.5274105     -0.8180495      0.9069167 
##       VHL.RPPA        AR.RPPA      TFRC.RPPA    AKT1S1.R2Gn    IGFBP2.R2Gn 
##      0.8539464      0.7157563     -0.8223625     -0.7682753     -0.8755194 
##      AKT2.R2Gn     GATA3.R2Gn      FASN.R2Gn    CTNNB1.R2Gn      TGM2.R2Gn 
##     -0.8230714     -0.6852798     -0.8902463     -0.8664015      0.6923561 
##     CCND1.R2Gn    PIK3R1.R2Gn       PXN.R2Gn     RPTOR.R2Gn    SQSTM1.R2Gn 
##     -0.7539605      0.8603335      0.7407626     -0.7716180      0.7578279 
## hsa-mir-1185-1   hsa-mir-1193   hsa-mir-1197   hsa-mir-1258    hsa-mir-127 
##     -0.7455247     -0.8257255     -0.6908033      1.1115348     -0.7041091 
##   hsa-mir-1291    hsa-mir-134    hsa-mir-136    hsa-mir-154   hsa-mir-2114 
##      0.8040902     -0.6912294     -0.7319809     -0.6972540      0.9960010 
##   hsa-mir-3166    hsa-mir-323   hsa-mir-323b  hsa-mir-329-1  hsa-mir-329-2 
##     -0.7005083     -0.7205532     -0.6778538     -0.7892139     -1.1514295 
##    hsa-mir-337   hsa-mir-3655    hsa-mir-369    hsa-mir-370 hsa-mir-376a-1 
##     -0.7164329      0.6756809     -0.7181460     -0.7078798     -0.8083775 
## hsa-mir-376a-2   hsa-mir-376b    hsa-mir-377    hsa-mir-380    hsa-mir-382 
##     -0.7407880     -0.7184620     -0.7529196     -0.8568947     -0.6746157 
##   hsa-mir-3909   hsa-mir-3922 hsa-mir-3926-2    hsa-mir-410    hsa-mir-412 
##      0.8736193      0.9005470      0.9053655     -0.7001987     -0.8014099 
##    hsa-mir-431    hsa-mir-432    hsa-mir-466   hsa-mir-487a   hsa-mir-487b 
##     -0.7790305     -0.7756571      1.2096588     -0.7697183     -0.7303901 
##    hsa-mir-493    hsa-mir-496    hsa-mir-506    hsa-mir-507    hsa-mir-508 
##     -0.7359471     -0.7024296      1.4877862      1.6584772      1.4428013 
##  hsa-mir-509-1  hsa-mir-509-2  hsa-mir-509-3    hsa-mir-510 hsa-mir-513a-1 
##      1.3927785      1.3999859      1.3987535      1.9970228      1.4671548 
## hsa-mir-513a-2   hsa-mir-513b   hsa-mir-513c  hsa-mir-514-1  hsa-mir-514-2 
##      1.5612417      1.3697259      1.3370295      1.4764641      1.4873631 
##  hsa-mir-514-3   hsa-mir-514b    hsa-mir-539    hsa-mir-541    hsa-mir-552 
##      1.4849702      1.2816265     -0.6982799     -0.7922268      0.6955907 
##    hsa-mir-585    hsa-mir-605    hsa-mir-615    hsa-mir-653    hsa-mir-654 
##      0.6831848      1.1618128     -0.7770979      0.7249857     -0.7071541 
##    hsa-mir-655    hsa-mir-656    hsa-mir-665    hsa-mir-668    hsa-mir-770 
##     -0.7645098     -1.0122797     -0.9011850     -0.6794406     -0.9453659 
##    hsa-mir-876    hsa-mir-889   hsa-mir-891a 
##      0.8334968     -0.6934538      0.6908017 
## 
## $`10bc`$bicluster7
##     RBM15.RPPA     GATA3.RPPA    IGFBP2.R2Gn       FN1.R2Gn     GATA3.R2Gn 
##      0.7563999      0.8045924      0.7044075      1.5105720      0.8053707 
##    CTNNB1.R2Gn     CCND1.R2Gn hsa-mir-1185-1 hsa-mir-1185-2  hsa-mir-124-3 
##      0.7888432      1.0074275     -0.8852070     -0.7269802      0.7182450 
##   hsa-mir-1269   hsa-mir-135b    hsa-mir-206   hsa-mir-2114    hsa-mir-296 
##      0.7423955      0.9636991      0.8609145     -1.0739371     -0.8379147 
##   hsa-mir-3144   hsa-mir-3166 hsa-mir-3199-1 hsa-mir-320c-2   hsa-mir-3655 
##      0.7368974      0.8709674     -0.8448901     -0.7740326     -0.8200618 
##   hsa-mir-3923 hsa-mir-3926-2    hsa-mir-411    hsa-mir-429    hsa-mir-485 
##      1.2458162     -0.7670181     -0.8065099      0.8136113     -0.7966192 
##   hsa-mir-487a    hsa-mir-494    hsa-mir-506    hsa-mir-507    hsa-mir-508 
##     -0.7572892     -0.6984286     -1.1966336     -1.5059972     -1.1635007 
##  hsa-mir-509-1  hsa-mir-509-2  hsa-mir-509-3    hsa-mir-510 hsa-mir-513a-1 
##     -1.1993246     -1.2090071     -1.1840188     -1.5948701     -1.1167460 
## hsa-mir-513a-2   hsa-mir-513b   hsa-mir-513c  hsa-mir-514-1  hsa-mir-514-2 
##     -1.2067379     -1.0652999     -1.0159501     -1.2219215     -1.2360464 
##  hsa-mir-514-3   hsa-mir-514b    hsa-mir-543   hsa-mir-548q    hsa-mir-582 
##     -1.2408427     -1.1833782     -0.7327624     -0.6799517      0.7057430 
##    hsa-mir-655    hsa-mir-656 
##     -0.7380438     -0.7860848 
## 
## $`10bc`$bicluster2
##      G6PD.RPPA     GATA3.RPPA      G6PD.R2Gn       FN1.R2Gn    CTNNB1.R2Gn 
##     -1.0324020     -0.7398528     -0.7652069     -0.7904096     -0.7320277 
##      TGM2.R2Gn     CCND1.R2Gn hsa-mir-1185-1 hsa-mir-1185-2   hsa-mir-1197 
##     -0.8680783     -0.7788517      1.5722839      1.2743358      1.2771463 
##    hsa-mir-127    hsa-mir-134    hsa-mir-136    hsa-mir-154    hsa-mir-206 
##      1.0692791      1.0811956      1.0507731      1.1280179     -0.9939034 
##    hsa-mir-299   hsa-mir-3193 hsa-mir-3199-1    hsa-mir-323   hsa-mir-323b 
##      1.0391293     -0.6877791      0.7759127      1.1607170      1.1948102 
##  hsa-mir-329-1  hsa-mir-329-2    hsa-mir-337    hsa-mir-369    hsa-mir-370 
##      1.3168450      1.1471794      0.9078835      0.9956719      1.1286636 
## hsa-mir-376a-1 hsa-mir-376a-2   hsa-mir-376b   hsa-mir-376c    hsa-mir-377 
##      1.1252145      1.2781860      0.9979647      1.0881306      1.2012004 
##    hsa-mir-379    hsa-mir-380    hsa-mir-381    hsa-mir-382    hsa-mir-409 
##      1.0254371      1.3078617      1.0076786      1.1057500      1.0817756 
##    hsa-mir-410    hsa-mir-411    hsa-mir-412    hsa-mir-431    hsa-mir-432 
##      1.0059600      1.3517763      0.7848014      0.9465402      0.9652966 
##    hsa-mir-433    hsa-mir-485   hsa-mir-487a   hsa-mir-487b    hsa-mir-493 
##      1.1829576      1.3365774      1.4623399      1.0189098      0.7628048 
##    hsa-mir-494    hsa-mir-495    hsa-mir-496 hsa-mir-516a-2 hsa-mir-516b-1 
##      1.3256351      0.9670353      1.1038734     -0.7677328     -0.6735615 
##   hsa-mir-517a   hsa-mir-518b   hsa-mir-518c   hsa-mir-518f   hsa-mir-520a 
##     -1.0245409     -0.8109733     -0.6788923     -0.7513600     -0.7589637 
##   hsa-mir-526b    hsa-mir-539    hsa-mir-541    hsa-mir-543    hsa-mir-577 
##     -0.7156342      1.0002474      1.3104107      1.2778057     -0.7900686 
##    hsa-mir-580    hsa-mir-654    hsa-mir-655    hsa-mir-656    hsa-mir-665 
##      0.6758842      1.0956032      1.3401407      1.6811212      0.9901515 
##    hsa-mir-668    hsa-mir-758    hsa-mir-770    hsa-mir-889 
##      1.3754313      1.0163034      1.1315742      1.0784478 
## 
## $`10bc`$bicluster1
##      G6PD.RPPA       FN1.R2Gn      TGM2.R2Gn hsa-mir-1185-1 hsa-mir-1185-2 
##     -0.8751739     -0.9547080     -0.7701581      1.2875673      1.0640023 
##   hsa-mir-1197    hsa-mir-127    hsa-mir-134    hsa-mir-136    hsa-mir-154 
##      0.9647186      0.9416451      0.9477569      0.9450738      0.9481687 
##    hsa-mir-299    hsa-mir-323   hsa-mir-323b  hsa-mir-329-1  hsa-mir-329-2 
##      0.8898955      0.9558071      1.0119887      1.0574270      1.0611295 
##    hsa-mir-337    hsa-mir-369    hsa-mir-370 hsa-mir-376a-1 hsa-mir-376a-2 
##      0.7826329      0.8720431      0.9593036      0.9414308      1.0470675 
##   hsa-mir-376b   hsa-mir-376c    hsa-mir-377    hsa-mir-379    hsa-mir-380 
##      0.8579101      0.8943005      0.9395190      0.8850704      1.1203452 
##    hsa-mir-381    hsa-mir-382    hsa-mir-409    hsa-mir-410    hsa-mir-411 
##      0.8668566      0.8992530      0.9242129      0.8482490      1.1144084 
##    hsa-mir-412    hsa-mir-431    hsa-mir-432    hsa-mir-433    hsa-mir-485 
##      0.7347550      0.8128670      0.8206149      1.0782266      1.0886604 
##   hsa-mir-487a   hsa-mir-487b    hsa-mir-494    hsa-mir-495    hsa-mir-496 
##      1.2093248      0.8838277      1.0174403      0.7871374      0.9098792 
##    hsa-mir-539    hsa-mir-541    hsa-mir-543    hsa-mir-654    hsa-mir-655 
##      0.8638615      1.0520097      1.0151944      0.9399797      1.1057531 
##    hsa-mir-656    hsa-mir-665    hsa-mir-668    hsa-mir-758    hsa-mir-770 
##      1.3345000      0.9436418      1.0677259      0.8597992      0.9978195 
##    hsa-mir-889 
##      0.8845916 
## 
## $`10bc`$bicluster3
##      TGM2.R2Gn hsa-mir-1185-1  hsa-mir-329-1  hsa-mir-329-2    hsa-mir-506 
##     -0.7815945      0.6713936      0.7096430      0.7284656     -0.6827509 
##    hsa-mir-507    hsa-mir-508    hsa-mir-510 hsa-mir-513a-1 hsa-mir-513a-2 
##     -0.7432906     -0.7058996     -0.9944091     -0.7219759     -0.7453797 
##   hsa-mir-513c   hsa-mir-514b hsa-mir-516b-1   hsa-mir-517a   hsa-mir-518b 
##     -0.6759318     -0.6772861     -0.7750374     -0.8073668     -0.8075451 
##    hsa-mir-656 
##      0.8191651 
## 
## $`10bc`$bicluster8
##      G6PD.RPPA     ERBB3.R2Gn      TGM2.R2Gn hsa-mir-1185-1 hsa-mir-1185-2 
##     -0.8578145      1.0985669     -0.7422173      1.0497708      0.8854318 
##   hsa-mir-1197   hsa-mir-1269    hsa-mir-127    hsa-mir-134    hsa-mir-136 
##      0.7948017     -0.6893234      0.7122095      0.6782873      0.7426809 
##    hsa-mir-154    hsa-mir-206    hsa-mir-299    hsa-mir-323   hsa-mir-323b 
##      0.7654090     -0.6895200      0.6903261      0.7785561      0.8043037 
##  hsa-mir-329-1  hsa-mir-329-2    hsa-mir-369    hsa-mir-370 hsa-mir-376a-1 
##      0.8900127      0.8349306      0.6725965      0.7575411      0.7445226 
## hsa-mir-376a-2   hsa-mir-376b   hsa-mir-376c    hsa-mir-377    hsa-mir-379 
##      0.7800835      0.6753648      0.7185616      0.8123670      0.6821885 
##    hsa-mir-380    hsa-mir-381    hsa-mir-382    hsa-mir-409    hsa-mir-410 
##      0.8673392      0.6966778      0.7274808      0.7332409      0.7066824 
##    hsa-mir-411    hsa-mir-432    hsa-mir-433    hsa-mir-485   hsa-mir-487a 
##      0.8832058      0.6874621      0.8246066      0.8393091      0.9210298 
##   hsa-mir-487b    hsa-mir-494    hsa-mir-496   hsa-mir-517a    hsa-mir-539 
##      0.7299098      0.8012510      0.8134274     -0.9384336      0.7091134 
##    hsa-mir-541    hsa-mir-543    hsa-mir-654    hsa-mir-655    hsa-mir-656 
##      0.8027538      0.8393921      0.7468551      0.8661148      1.1191052 
##    hsa-mir-665    hsa-mir-668    hsa-mir-758    hsa-mir-770    hsa-mir-889 
##      0.7904591      0.8699738      0.6758522      0.7341120      0.7577327 
## 
## $`10bc`$bicluster6
##    FASN.RPPA hsa-mir-3934  hsa-mir-466  hsa-mir-510  hsa-mir-605 
##    0.9751094   -0.7307437   -0.7125538   -0.7708856   -0.8211215 
## 
## $`10bc`$bicluster5
## named numeric(0)
## 
## $`10bc`$bicluster4
##  G6PD.RPPA 
## -0.8633667

1. Convert microRNA to genes

Also remove the ending “.R2Gn” and “.RPPA” from gene names.

split.by.omic = function(variable.list) {
  out.mRSG = variable.list[startsWith(variable.list, "hsa")]
  out.R2Gn = variable.list[endsWith(variable.list, ".R2Gn")]
  out.RPPA = variable.list[endsWith(variable.list, ".RPPA")]
  out = list("miRNASeqGene" = out.mRSG,
             "RNASeq2GeneNorm" = out.R2Gn,
             "RPPAArray" = out.RPPA)
  out
}
multiomics.to.GENES = function(sel.features, full.search = F, table = "validated", drop.miRNA = F) {
  multiomics.list = split.by.omic(sel.features)
  # Convert miRNASeqGene to target GENE names
  # Skipped and returns an empty list instead of the list of select features,
  # or if microRNA features are explicitly dropped (drop.miRNA = T).
  # (Usually done when the features has only a few miRNA and unable to target any genes)
  if (length(multiomics.list[[1]]) > 0 & !drop.miRNA) {
    if (!full.search) { # Search only among the 198 genes in ACC, recommended
    targets= get_multimir(mirna = multiomics.list[[1]], 
                          target = gene.names,
                          table = table,
                          summary = T)
    mRSG.target.genes = unique(targets@data$target_symbol)
    } else { # Search the full dataset, not recommended. 
             # Use only if ACC gene search returns nothing or fails.
             # Genes not in the ACC genes need to be manually removed.
    targets= get_multimir(mirna = multiomics.list[[1]], 
                          table = table,
                          summary = T)  
    mRSG.target.genes = unique(targets@data$target_symbol)
    }
    
  } else {
    mRSG.target.genes = list()
  }
  #Remove suffix for Pathway Analysis Compatibility
  R2Gn.genes = str_remove(multiomics.list[[2]], ".R2Gn")
  
  RPPA.genes = str_remove(multiomics.list[[3]], ".RPPA")
  
  #Join all cleaned-up genes are remove duplicates.
  out1 = c(mRSG.target.genes, R2Gn.genes, RPPA.genes)
  out = as.character(unique(out1))
  out
}
geneNames <- list("Factor1of1"= multiomics.to.GENES(names(sel.features$`1bc`$bicluster1)),
                  
                  "Factor1of2"= multiomics.to.GENES(names(sel.features$`2bc`$bicluster1)),
                  "Factor2of2"= multiomics.to.GENES(names(sel.features$`2bc`$bicluster2)),
                  
                  "Factor1of3"= multiomics.to.GENES(names(sel.features$`3bc`$bicluster1)),
                  "Factor2of3"= multiomics.to.GENES(names(sel.features$`3bc`$bicluster2)),
                  "Factor3of3"= multiomics.to.GENES(names(sel.features$`3bc`$bicluster3)),
                  
                  "Factor1of5"= multiomics.to.GENES(names(sel.features$`5bc`$bicluster1)),
                  "Factor2of5"= multiomics.to.GENES(names(sel.features$`5bc`$bicluster2)),
                  "Factor3of5"= multiomics.to.GENES(names(sel.features$`5bc`$bicluster3)),
                  "Factor4of5"= multiomics.to.GENES(names(sel.features$`5bc`$bicluster4)),
                  "Factor5of5"= multiomics.to.GENES(names(sel.features$`5bc`$bicluster5)),
                  
                  "Factor1of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster1)),
                  "Factor2of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster2)),
                  "Factor3of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster3)),
                  "Factor4of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster4)),
                  "Factor5of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster5)), #Empty
                  "Factor6of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster6)),
                  "Factor7of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster7)),
                  "Factor8of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster8)),
                  "Factor9of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster9)),
                  "Factor10of10"= multiomics.to.GENES(names(sel.features$`10bc`$bicluster10))
                  )
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
geneNames
## $Factor1of1
##  [1] "HSPA1A" "AKT1"   "VHL"    "MTOR"   "MAPK8"  "MYH9"   "CDKN1A" "FOXO3" 
##  [9] "ATM"    "CASP8"  "MACC1"  "PTEN"   "KRAS"   "NRAS"   "PTK2"   "ETS1"  
## [17] "STAT5A" "CCND1"  "YAP1"   "ITGA2"  "MAPK1"  "ANLN"   "TGM2"   "G6PD"  
## 
## $Factor1of2
##  [1] "ESR1"   "MET"    "G6PD"   "BCL2"   "KRAS"   "CCND1"  "NOTCH3" "AKT1"  
##  [9] "IGF1R"  "ETS1"   "XIAP"   "MAPK8"  "ARID1A" "BID"    "PTEN"   "NRAS"  
## [17] "PTK2"   "ATM"    "YWHAZ"  "FOXO3"  "CHEK1"  "FN1"    "NCOA3"  "GAB2"  
## [25] "ITGA2"  "CTNNB1"
## 
## $Factor2of2
##  [1] "RB1"    "XIAP"   "HSPA1A" "AKT1"   "VHL"    "MTOR"   "MAPK8"  "ETS1"  
##  [9] "ARID1A" "BID"    "MYH9"   "CDKN1A" "FOXO3"  "ATM"    "CASP8"  "MACC1" 
## [17] "PTEN"   "KRAS"   "NRAS"   "PTK2"   "CCND1"  "PIK3R1" "CHEK1"  "IGF1R" 
## [25] "SRSF1"  "TUBA1B" "STAT5A" "NCOA3"  "YAP1"   "ITGA2"  "MAPK1"  "GAB2"  
## [33] "ANLN"   "TGM2"   "SQSTM1" "G6PD"   "RBM15"  "FASN"   "TTF1"  
## 
## $Factor1of3
##  [1] "ESR1"    "MET"     "G6PD"    "BCL2"    "KRAS"    "CCND1"   "NOTCH3" 
##  [8] "AKT1"    "IGF1R"   "HSPA1A"  "VHL"     "MTOR"    "MAPK8"   "MYH9"   
## [15] "CDKN1A"  "FOXO3"   "ATM"     "CASP8"   "MACC1"   "PTEN"    "NRAS"   
## [22] "PTK2"    "ETS1"    "PARP1"   "CCNE2"   "RAB25"   "YWHAZ"   "STAT5A" 
## [29] "MYC"     "CASP3"   "BCL2L11" "YAP1"    "CHEK1"   "FN1"     "MSH6"   
## [36] "ITGA2"   "PIK3CA"  "MAPK1"   "SRSF1"   "ANLN"    "ERBB3"   "CDH2"   
## [43] "CTNNB1"  "TGM2"   
## 
## $Factor2of3
##  [1] "ETS1"   "XIAP"   "MAPK8"  "ARID1A" "BID"    "MYH9"   "CDKN1A" "FOXO3" 
##  [9] "ATM"    "CASP8"  "MACC1"  "CCND1"  "PIK3R1" "CHEK1"  "IGF1R"  "SRSF1" 
## [17] "TUBA1B" "STAT5A" "NCOA3"  "GAB2"   "YAP1"   "MAPK1"  "ANLN"   "TGM2"  
## [25] "G6PD"   "FASN"  
## 
## $Factor3of3
##  [1] "ESR1"   "MET"    "G6PD"   "BCL2"   "KRAS"   "CCND1"  "NOTCH3" "AKT1"  
##  [9] "IGF1R"  "ETS1"   "XIAP"   "MAPK8"  "ARID1A" "BID"    "YWHAZ"  "FOXO3" 
## [17] "CHEK1"  "FN1"    "NCOA3"  "GAB2"   "IGFBP2" "CTNNB1" "GATA3" 
## 
## $Factor1of5
##  [1] "RB1"    "XIAP"   "HSPA1A" "AKT1"   "VHL"    "MTOR"   "MAPK8"  "ETS1"  
##  [9] "ARID1A" "BID"    "MYH9"   "CDKN1A" "FOXO3"  "ATM"    "CASP8"  "MACC1" 
## [17] "PTEN"   "KRAS"   "NRAS"   "PTK2"   "CCND1"  "PIK3R1" "CHEK1"  "IGF1R" 
## [25] "SRSF1"  "TUBA1B" "STAT5A" "NCOA3"  "YAP1"   "ITGA2"  "MAPK1"  "GAB2"  
## [33] "ANLN"   "ERBB3"  "IGFBP2" "TGM2"   "G6PD"   "FASN"   "TSC1"   "TTF1"  
## 
## $Factor2of5
##  [1] "HSPA1A"  "AKT1"    "VHL"     "MTOR"    "MAPK8"   "MYH9"    "CDKN1A" 
##  [8] "FOXO3"   "ATM"     "CASP8"   "MACC1"   "PTEN"    "KRAS"    "NRAS"   
## [15] "PTK2"    "ETS1"    "PARP1"   "IGF1R"   "CCNE2"   "RAB25"   "CCND1"  
## [22] "XIAP"    "STAT5A"  "BCL2"    "MYC"     "CASP3"   "BCL2L11" "YAP1"   
## [29] "MSH6"    "ITGA2"   "PIK3CA"  "MAPK1"   "SRSF1"   "ANLN"    "G6PD"   
## [36] "TGM2"    "SQSTM1"  "FASN"    "INPP4B"  "TTF1"    "PRDX1"  
## 
## $Factor3of5
## [1] "CDKN1A" "STAT5A" "TGM2"  
## 
## $Factor4of5
##  [1] "ETS1"   "XIAP"   "MAPK8"  "ARID1A" "BID"    "PTEN"   "KRAS"   "NRAS"  
##  [9] "PTK2"   "ATM"    "NCOA3"  "GAB2"   "ITGA2"  "IGFBP2" "FN1"    "CCND1" 
## [17] "G6PD"  
## 
## $Factor5of5
##  [1] "RB1"    "XIAP"   "ETS1"   "MAPK8"  "ARID1A" "BID"    "YWHAZ"  "NCOA3" 
##  [9] "GAB2"   "FN1"    "CTNNB1" "CCND1"  "FASN"  
## 
## $Factor1of10
##  [1] "HSPA1A" "AKT1"   "VHL"    "MTOR"   "MAPK8"  "MYH9"   "CDKN1A" "FOXO3" 
##  [9] "ATM"    "CASP8"  "MACC1"  "PTEN"   "KRAS"   "NRAS"   "PTK2"   "ETS1"  
## [17] "STAT5A" "CCND1"  "YAP1"   "ITGA2"  "MAPK1"  "ANLN"   "FN1"    "TGM2"  
## [25] "G6PD"  
## 
## $Factor2of10
##  [1] "ESR1"    "MET"     "G6PD"    "BCL2"    "KRAS"    "CCND1"   "NOTCH3" 
##  [8] "AKT1"    "IGF1R"   "HSPA1A"  "VHL"     "MTOR"    "MAPK8"   "MYH9"   
## [15] "CDKN1A"  "FOXO3"   "ATM"     "CASP8"   "MACC1"   "PTEN"    "NRAS"   
## [22] "PTK2"    "ETS1"    "PARP1"   "CCNE2"   "RAB25"   "STAT5A"  "MYC"    
## [29] "CASP3"   "BCL2L11" "YAP1"    "CHEK1"   "FN1"     "MSH6"    "ITGA2"  
## [36] "PIK3CA"  "MAPK1"   "SRSF1"   "ANLN"    "CTNNB1"  "TGM2"    "GATA3"  
## 
## $Factor3of10
## [1] "ETS1"   "XIAP"   "MAPK8"  "ARID1A" "BID"    "NCOA3"  "GAB2"   "TGM2"  
## 
## $Factor4of10
## [1] "G6PD"
## 
## $Factor5of10
## character(0)
## 
## $Factor6of10
## [1] "CCND1"  "PIK3R1" "XIAP"   "CHEK1"  "IGF1R"  "SRSF1"  "TUBA1B" "FASN"  
## 
## $Factor7of10
##  [1] "ESR1"    "MET"     "BAP1"    "ERRFI1"  "G6PD"    "BCL2"    "KRAS"   
##  [8] "CCND1"   "NOTCH3"  "AKT1"    "IGF1R"   "PTEN"    "CDKN1B"  "IRS1"   
## [15] "MYC"     "JUN"     "BCL2L11" "EZH2"    "SHC1"    "XIAP"    "ETS1"   
## [22] "MAPK8"   "ARID1A"  "BID"     "NRAS"    "PTK2"    "ATM"     "YWHAZ"  
## [29] "MAPT"    "CHEK2"   "NCOA3"   "AXL"     "CDKN1A"  "EGFR"    "CAV1"   
## [36] "CASP3"   "ANXA1"   "TFF1"    "FOXO3"   "STAT3"   "ASNS"    "CHEK1"  
## [43] "FOXM1"   "FN1"     "IGFBP2"  "ITGA2"   "RET"     "SQSTM1"  "CCNE2"  
## [50] "GAB2"    "NDRG1"   "INPP4B"  "LCN2"    "RAD50"   "GATA3"   "CTNNB1" 
## [57] "RBM15"  
## 
## $Factor8of10
##  [1] "ESR1"   "MET"    "G6PD"   "BCL2"   "KRAS"   "CCND1"  "NOTCH3" "AKT1"  
##  [9] "IGF1R"  "HSPA1A" "VHL"    "MTOR"   "MAPK8"  "MYH9"   "CDKN1A" "FOXO3" 
## [17] "ATM"    "CASP8"  "MACC1"  "PTEN"   "NRAS"   "PTK2"   "ETS1"   "STAT5A"
## [25] "YAP1"   "CHEK1"  "FN1"    "ITGA2"  "MAPK1"  "ANLN"   "ERBB3"  "TGM2"  
## 
## $Factor9of10
##  [1] "RB1"     "XIAP"    "HSPA1A"  "AKT1"    "VHL"     "MTOR"    "MAPK8"  
##  [8] "ETS1"    "ARID1A"  "BID"     "MYH9"    "CDKN1A"  "FOXO3"   "ATM"    
## [15] "CASP8"   "MACC1"   "PTEN"    "KRAS"    "NRAS"    "PTK2"    "PARP1"  
## [22] "IGF1R"   "CCNE2"   "RAB25"   "CCND1"   "PIK3R1"  "CHEK1"   "SRSF1"  
## [29] "TUBA1B"  "STAT5A"  "CDKN1B"  "BCL2L11" "BCL2"    "NCOA3"   "MYC"    
## [36] "CASP3"   "YAP1"    "MSH6"    "ITGA2"   "PIK3CA"  "MAPK1"   "GAB2"   
## [43] "ANLN"    "G6PD"    "MET"     "FASN"    "TGM2"    "PXN"     "SQSTM1" 
## [50] "BRCA2"   "INPP4B"  "TTF1"    "PRDX1"  
## 
## $Factor10of10
##  [1] "RB1"    "XIAP"   "HSPA1A" "AKT1"   "VHL"    "MTOR"   "MAPK8"  "ETS1"  
##  [9] "ARID1A" "BID"    "MYH9"   "CDKN1A" "FOXO3"  "ATM"    "CASP8"  "MACC1" 
## [17] "YWHAZ"  "CCND1"  "PIK3R1" "CHEK1"  "IGF1R"  "SRSF1"  "TUBA1B" "NRAS"  
## [25] "STAT5A" "PTEN"   "NCOA3"  "E2F1"   "CASP9"  "CDKN2A" "CCNE1"  "MAPK9" 
## [33] "RAF1"   "AKT2"   "YAP1"   "BCL2L1" "DVL3"   "SMAD3"  "PRKCA"  "MAPK1" 
## [41] "MAPK3"  "GAB2"   "ANLN"   "AKT1S1" "IGFBP2" "GATA3"  "FASN"   "CTNNB1"
## [49] "TGM2"   "PXN"    "RPTOR"  "SQSTM1" "G6PD"   "RBM15"  "TSC1"   "TTF1"  
## [57] "AR"     "TFRC"
saveRDS(geneNames, file = "data/sel_features/gene_converted/genes_fabia_extracted_by_bic.rds")

2. Pathway Analysis

A. GO Classification

ggo_MF <- list()#functional profile of a geneset for Molecular Function
ggo_BP <- list()#functional profile of a geneset for Biological Process
ggo_CC <- list()#functional profile of a geneset for Cellular Component


for(z in 1:length(geneNames)){
  print(z)
  input <- geneNames[[z]]

  ggo_MF[[z]] <- groupGO(gene=input,
    OrgDb = org.Hs.eg.db,
    ont="MF",
    keyType="SYMBOL",
    readable=TRUE)
  
  ggo_BP[[z]] <- groupGO(gene=input,
    OrgDb = org.Hs.eg.db,
    ont="BP",
    keyType="SYMBOL",
    readable=TRUE)

  ggo_CC[[z]] <- groupGO(gene=input,
    OrgDb = org.Hs.eg.db,
    ont="CC",
    keyType="SYMBOL",
    readable=TRUE)    
}
## [1] 1
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 7
## [1] 8
## [1] 9
## [1] 10
## [1] 11
## [1] 12
## [1] 13
## [1] 14
## [1] 15
## [1] 16
## [1] 17
## [1] 18
## [1] 19
## [1] 20
## [1] 21
for(z in 1:length(geneNames)) {
  print(head(ggo_MF[[z]]))
  print(head(ggo_BP[[z]]))
  print(head(ggo_CC[[z]]))
}
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/24
## GO:0003824 GO:0003824           catalytic activity    16     16/24
## GO:0005198 GO:0005198 structural molecule activity     0      0/24
## GO:0005215 GO:0005215         transporter activity     0      0/24
## GO:0005488 GO:0005488                      binding    24     24/24
## GO:0009055 GO:0009055   electron transfer activity     0      0/24
##                                                                                                                                        geneID
## GO:0003774                                                                                                                               MYH9
## GO:0003824                                              HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/KRAS/NRAS/PTK2/CCND1/MAPK1/TGM2/G6PD
## GO:0005198                                                                                                                                   
## GO:0005215                                                                                                                                   
## GO:0005488 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/ANLN/TGM2/G6PD
## GO:0009055                                                                                                                                   
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     8      8/24
## GO:0002376 GO:0002376 immune system process    14     14/24
## GO:0008152 GO:0008152     metabolic process    22     22/24
## GO:0009987 GO:0009987      cellular process    24     24/24
## GO:0016032 GO:0016032         viral process     3      3/24
## GO:0022414 GO:0022414  reproductive process     8      8/24
##                                                                                                                                        geneID
## GO:0000003                                                                                          AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2
## GO:0002376                                                      HSPA1A/AKT1/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/ETS1/ITGA2/MAPK1/G6PD
## GO:0008152           HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/TGM2/G6PD
## GO:0009987 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/ANLN/TGM2/G6PD
## GO:0016032                                                                                                                  HSPA1A/AKT1/ITGA2
## GO:0022414                                                                                          AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    14     14/24
## GO:0044423 GO:0044423           virion component     0      0/24
## GO:0110165 GO:0110165 cellular anatomical entity    24     24/24
##                                                                                                                                        geneID
## GO:0032991                                                     HSPA1A/AKT1/MTOR/MYH9/CDKN1A/FOXO3/ATM/CASP8/ETS1/STAT5A/CCND1/YAP1/ITGA2/TGM2
## GO:0044423                                                                                                                                   
## GO:0110165 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/ANLN/TGM2/G6PD
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0      0/26
## GO:0003824 GO:0003824           catalytic activity    14     14/26
## GO:0005198 GO:0005198 structural molecule activity     1      1/26
## GO:0005215 GO:0005215         transporter activity     2      2/26
## GO:0005488 GO:0005488                      binding    26     26/26
## GO:0009055 GO:0009055   electron transfer activity     0      0/26
##                                                                                                                                                 geneID
## GO:0003774                                                                                                                                            
## GO:0003824                                                                    MET/G6PD/KRAS/CCND1/AKT1/IGF1R/XIAP/MAPK8/PTEN/NRAS/PTK2/ATM/CHEK1/NCOA3
## GO:0005198                                                                                                                                         FN1
## GO:0005215                                                                                                                                  BCL2/IGF1R
## GO:0005488 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/PTEN/NRAS/PTK2/ATM/YWHAZ/FOXO3/CHEK1/FN1/NCOA3/GAB2/ITGA2/CTNNB1
## GO:0009055                                                                                                                                            
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     9      9/26
## GO:0002376 GO:0002376 immune system process    18     18/26
## GO:0008152 GO:0008152     metabolic process    24     24/26
## GO:0009987 GO:0009987      cellular process    26     26/26
## GO:0016032 GO:0016032         viral process     3      3/26
## GO:0022414 GO:0022414  reproductive process     9      9/26
##                                                                                                                                                 geneID
## GO:0000003                                                                                            ESR1/BCL2/AKT1/IGF1R/PTEN/ATM/FOXO3/ITGA2/CTNNB1
## GO:0002376                                             ESR1/G6PD/BCL2/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/PTK2/ATM/YWHAZ/FOXO3/FN1/GAB2/ITGA2/CTNNB1
## GO:0008152           ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/PTEN/PTK2/ATM/YWHAZ/FOXO3/CHEK1/FN1/NCOA3/ITGA2/CTNNB1
## GO:0009987 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/PTEN/NRAS/PTK2/ATM/YWHAZ/FOXO3/CHEK1/FN1/NCOA3/GAB2/ITGA2/CTNNB1
## GO:0016032                                                                                                                             BCL2/AKT1/ITGA2
## GO:0022414                                                                                            ESR1/BCL2/AKT1/IGF1R/PTEN/ATM/FOXO3/ITGA2/CTNNB1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    16     16/26
## GO:0044423 GO:0044423           virion component     0      0/26
## GO:0110165 GO:0110165 cellular anatomical entity    26     26/26
##                                                                                                                                                 geneID
## GO:0032991                                                    ESR1/MET/BCL2/CCND1/NOTCH3/AKT1/IGF1R/ETS1/ARID1A/ATM/FOXO3/CHEK1/FN1/NCOA3/ITGA2/CTNNB1
## GO:0044423                                                                                                                                            
## GO:0110165 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/PTEN/NRAS/PTK2/ATM/YWHAZ/FOXO3/CHEK1/FN1/NCOA3/GAB2/ITGA2/CTNNB1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/39
## GO:0003824 GO:0003824           catalytic activity    23     23/39
## GO:0005198 GO:0005198 structural molecule activity     1      1/39
## GO:0005215 GO:0005215         transporter activity     1      1/39
## GO:0005488 GO:0005488                      binding    39     39/39
## GO:0009055 GO:0009055   electron transfer activity     0      0/39
##                                                                                                                                                                                                                              geneID
## GO:0003774                                                                                                                                                                                                                     MYH9
## GO:0003824                                                                                          XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/TUBA1B/NCOA3/MAPK1/TGM2/G6PD/FASN
## GO:0005198                                                                                                                                                                                                                   TUBA1B
## GO:0005215                                                                                                                                                                                                                    IGF1R
## GO:0005488 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/NCOA3/YAP1/ITGA2/MAPK1/GAB2/ANLN/TGM2/SQSTM1/G6PD/RBM15/FASN/TTF1
## GO:0009055                                                                                                                                                                                                                         
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    10     10/39
## GO:0002376 GO:0002376 immune system process    23     23/39
## GO:0008152 GO:0008152     metabolic process    35     35/39
## GO:0009987 GO:0009987      cellular process    39     39/39
## GO:0016032 GO:0016032         viral process     3      3/39
## GO:0022414 GO:0022414  reproductive process    10     10/39
##                                                                                                                                                                                                                              geneID
## GO:0000003                                                                                                                                                                      RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/IGF1R/ITGA2
## GO:0002376                                                                                         RB1/XIAP/HSPA1A/AKT1/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/PIK3R1/IGF1R/ITGA2/MAPK1/GAB2/SQSTM1/G6PD/RBM15
## GO:0008152                       RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/NCOA3/YAP1/ITGA2/MAPK1/TGM2/SQSTM1/G6PD/RBM15/FASN/TTF1
## GO:0009987 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/NCOA3/YAP1/ITGA2/MAPK1/GAB2/ANLN/TGM2/SQSTM1/G6PD/RBM15/FASN/TTF1
## GO:0016032                                                                                                                                                                                                        HSPA1A/AKT1/ITGA2
## GO:0022414                                                                                                                                                                      RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/IGF1R/ITGA2
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    22     22/39
## GO:0044423 GO:0044423           virion component     0      0/39
## GO:0110165 GO:0110165 cellular anatomical entity    39     39/39
##                                                                                                                                                                                                                              geneID
## GO:0032991                                                                                           RB1/HSPA1A/AKT1/MTOR/ETS1/ARID1A/MYH9/CDKN1A/FOXO3/ATM/CASP8/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/NCOA3/YAP1/ITGA2/TGM2/RBM15
## GO:0044423                                                                                                                                                                                                                         
## GO:0110165 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/NCOA3/YAP1/ITGA2/MAPK1/GAB2/ANLN/TGM2/SQSTM1/G6PD/RBM15/FASN/TTF1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/44
## GO:0003824 GO:0003824           catalytic activity    24     24/44
## GO:0005198 GO:0005198 structural molecule activity     1      1/44
## GO:0005215 GO:0005215         transporter activity     2      2/44
## GO:0005488 GO:0005488                      binding    44     44/44
## GO:0009055 GO:0009055   electron transfer activity     0      0/44
##                                                                                                                                                                                                                                                           geneID
## GO:0003774                                                                                                                                                                                                                                                  MYH9
## GO:0003824                                                                                                                   MET/G6PD/KRAS/CCND1/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/NRAS/PTK2/PARP1/RAB25/CASP3/CHEK1/MSH6/PIK3CA/MAPK1/TGM2
## GO:0005198                                                                                                                                                                                                                                                   FN1
## GO:0005215                                                                                                                                                                                                                                            BCL2/IGF1R
## GO:0005488 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/NRAS/PTK2/ETS1/PARP1/CCNE2/RAB25/YWHAZ/STAT5A/MYC/CASP3/BCL2L11/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ANLN/ERBB3/CDH2/CTNNB1/TGM2
## GO:0009055                                                                                                                                                                                                                                                      
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    18     18/44
## GO:0002376 GO:0002376 immune system process    26     26/44
## GO:0008152 GO:0008152     metabolic process    39     39/44
## GO:0009987 GO:0009987      cellular process    44     44/44
## GO:0016032 GO:0016032         viral process     4      4/44
## GO:0022414 GO:0022414  reproductive process    18     18/44
##                                                                                                                                                                                                                                                           geneID
## GO:0000003                                                                                                                                                ESR1/BCL2/AKT1/IGF1R/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/PARP1/CCNE2/CASP3/BCL2L11/MSH6/ITGA2/PIK3CA/CTNNB1
## GO:0002376                                                                                                    ESR1/G6PD/BCL2/AKT1/IGF1R/HSPA1A/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/ETS1/PARP1/YWHAZ/MYC/CASP3/BCL2L11/FN1/MSH6/ITGA2/PIK3CA/MAPK1/CTNNB1
## GO:0008152                              ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/PTK2/ETS1/PARP1/CCNE2/YWHAZ/STAT5A/MYC/CASP3/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ERBB3/CTNNB1/TGM2
## GO:0009987 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/NRAS/PTK2/ETS1/PARP1/CCNE2/RAB25/YWHAZ/STAT5A/MYC/CASP3/BCL2L11/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ANLN/ERBB3/CDH2/CTNNB1/TGM2
## GO:0016032                                                                                                                                                                                                                                BCL2/AKT1/HSPA1A/ITGA2
## GO:0022414                                                                                                                                                ESR1/BCL2/AKT1/IGF1R/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/PARP1/CCNE2/CASP3/BCL2L11/MSH6/ITGA2/PIK3CA/CTNNB1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    32     32/44
## GO:0044423 GO:0044423           virion component     0      0/44
## GO:0110165 GO:0110165 cellular anatomical entity    44     44/44
##                                                                                                                                                                                                                                                           geneID
## GO:0032991                                                                 ESR1/MET/BCL2/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/MTOR/MYH9/CDKN1A/FOXO3/ATM/CASP8/ETS1/PARP1/CCNE2/STAT5A/MYC/CASP3/BCL2L11/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/SRSF1/ERBB3/CDH2/CTNNB1/TGM2
## GO:0044423                                                                                                                                                                                                                                                      
## GO:0110165 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/NRAS/PTK2/ETS1/PARP1/CCNE2/RAB25/YWHAZ/STAT5A/MYC/CASP3/BCL2L11/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ANLN/ERBB3/CDH2/CTNNB1/TGM2
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/26
## GO:0003824 GO:0003824           catalytic activity    15     15/26
## GO:0005198 GO:0005198 structural molecule activity     1      1/26
## GO:0005215 GO:0005215         transporter activity     1      1/26
## GO:0005488 GO:0005488                      binding    26     26/26
## GO:0009055 GO:0009055   electron transfer activity     0      0/26
##                                                                                                                                                         geneID
## GO:0003774                                                                                                                                                MYH9
## GO:0003824                                                              XIAP/MAPK8/CDKN1A/ATM/CASP8/CCND1/PIK3R1/CHEK1/IGF1R/TUBA1B/NCOA3/MAPK1/TGM2/G6PD/FASN
## GO:0005198                                                                                                                                              TUBA1B
## GO:0005215                                                                                                                                               IGF1R
## GO:0005488 ETS1/XIAP/MAPK8/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/NCOA3/GAB2/YAP1/MAPK1/ANLN/TGM2/G6PD/FASN
## GO:0009055                                                                                                                                                    
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     5      5/26
## GO:0002376 GO:0002376 immune system process    15     15/26
## GO:0008152 GO:0008152     metabolic process    23     23/26
## GO:0009987 GO:0009987      cellular process    26     26/26
## GO:0016032 GO:0016032         viral process     0      0/26
## GO:0022414 GO:0022414  reproductive process     5      5/26
##                                                                                                                                                         geneID
## GO:0000003                                                                                                                          MYH9/FOXO3/ATM/CASP8/IGF1R
## GO:0002376                                                                 ETS1/XIAP/MAPK8/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/PIK3R1/IGF1R/GAB2/MAPK1/G6PD
## GO:0008152                  ETS1/XIAP/MAPK8/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/NCOA3/YAP1/MAPK1/TGM2/G6PD/FASN
## GO:0009987 ETS1/XIAP/MAPK8/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/NCOA3/GAB2/YAP1/MAPK1/ANLN/TGM2/G6PD/FASN
## GO:0016032                                                                                                                                                    
## GO:0022414                                                                                                                          MYH9/FOXO3/ATM/CASP8/IGF1R
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    16     16/26
## GO:0044423 GO:0044423           virion component     0      0/26
## GO:0110165 GO:0110165 cellular anatomical entity    26     26/26
##                                                                                                                                                         geneID
## GO:0032991                                                       ETS1/ARID1A/MYH9/CDKN1A/FOXO3/ATM/CASP8/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/NCOA3/YAP1/TGM2
## GO:0044423                                                                                                                                                    
## GO:0110165 ETS1/XIAP/MAPK8/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/NCOA3/GAB2/YAP1/MAPK1/ANLN/TGM2/G6PD/FASN
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0      0/23
## GO:0003824 GO:0003824           catalytic activity    10     10/23
## GO:0005198 GO:0005198 structural molecule activity     1      1/23
## GO:0005215 GO:0005215         transporter activity     2      2/23
## GO:0005488 GO:0005488                      binding    23     23/23
## GO:0009055 GO:0009055   electron transfer activity     0      0/23
##                                                                                                                                     geneID
## GO:0003774                                                                                                                                
## GO:0003824                                                                           MET/G6PD/KRAS/CCND1/AKT1/IGF1R/XIAP/MAPK8/CHEK1/NCOA3
## GO:0005198                                                                                                                             FN1
## GO:0005215                                                                                                                      BCL2/IGF1R
## GO:0005488 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/YWHAZ/FOXO3/CHEK1/FN1/NCOA3/GAB2/IGFBP2/CTNNB1/GATA3
## GO:0009055                                                                                                                                
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     8      8/23
## GO:0002376 GO:0002376 immune system process    17     17/23
## GO:0008152 GO:0008152     metabolic process    21     21/23
## GO:0009987 GO:0009987      cellular process    23     23/23
## GO:0016032 GO:0016032         viral process     2      2/23
## GO:0022414 GO:0022414  reproductive process     8      8/23
##                                                                                                                                     geneID
## GO:0000003                                                                                  ESR1/BCL2/AKT1/IGF1R/FOXO3/IGFBP2/CTNNB1/GATA3
## GO:0002376                                   ESR1/G6PD/BCL2/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/YWHAZ/FOXO3/FN1/GAB2/IGFBP2/CTNNB1/GATA3
## GO:0008152             ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/YWHAZ/FOXO3/CHEK1/FN1/NCOA3/CTNNB1/GATA3
## GO:0009987 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/YWHAZ/FOXO3/CHEK1/FN1/NCOA3/GAB2/IGFBP2/CTNNB1/GATA3
## GO:0016032                                                                                                                       BCL2/AKT1
## GO:0022414                                                                                  ESR1/BCL2/AKT1/IGF1R/FOXO3/IGFBP2/CTNNB1/GATA3
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    15     15/23
## GO:0044423 GO:0044423           virion component     0      0/23
## GO:0110165 GO:0110165 cellular anatomical entity    23     23/23
##                                                                                                                                     geneID
## GO:0032991                                            ESR1/MET/BCL2/CCND1/NOTCH3/AKT1/IGF1R/ETS1/ARID1A/FOXO3/CHEK1/FN1/NCOA3/CTNNB1/GATA3
## GO:0044423                                                                                                                                
## GO:0110165 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/ETS1/XIAP/MAPK8/ARID1A/BID/YWHAZ/FOXO3/CHEK1/FN1/NCOA3/GAB2/IGFBP2/CTNNB1/GATA3
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/40
## GO:0003824 GO:0003824           catalytic activity    23     23/40
## GO:0005198 GO:0005198 structural molecule activity     1      1/40
## GO:0005215 GO:0005215         transporter activity     1      1/40
## GO:0005488 GO:0005488                      binding    40     40/40
## GO:0009055 GO:0009055   electron transfer activity     0      0/40
##                                                                                                                                                                                                                                   geneID
## GO:0003774                                                                                                                                                                                                                          MYH9
## GO:0003824                                                                                               XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/TUBA1B/NCOA3/MAPK1/TGM2/G6PD/FASN
## GO:0005198                                                                                                                                                                                                                        TUBA1B
## GO:0005215                                                                                                                                                                                                                         IGF1R
## GO:0005488 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/NCOA3/YAP1/ITGA2/MAPK1/GAB2/ANLN/ERBB3/IGFBP2/TGM2/G6PD/FASN/TSC1/TTF1
## GO:0009055                                                                                                                                                                                                                              
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    11     11/40
## GO:0002376 GO:0002376 immune system process    23     23/40
## GO:0008152 GO:0008152     metabolic process    35     35/40
## GO:0009987 GO:0009987      cellular process    40     40/40
## GO:0016032 GO:0016032         viral process     3      3/40
## GO:0022414 GO:0022414  reproductive process    11     11/40
##                                                                                                                                                                                                                                   geneID
## GO:0000003                                                                                                                                                                    RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/IGF1R/ITGA2/IGFBP2
## GO:0002376                                                                                               RB1/XIAP/HSPA1A/AKT1/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/PIK3R1/IGF1R/ITGA2/MAPK1/GAB2/IGFBP2/G6PD/TSC1
## GO:0008152                              RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/NCOA3/YAP1/ITGA2/MAPK1/ERBB3/TGM2/G6PD/FASN/TSC1/TTF1
## GO:0009987 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/NCOA3/YAP1/ITGA2/MAPK1/GAB2/ANLN/ERBB3/IGFBP2/TGM2/G6PD/FASN/TSC1/TTF1
## GO:0016032                                                                                                                                                                                                             HSPA1A/AKT1/ITGA2
## GO:0022414                                                                                                                                                                    RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/IGF1R/ITGA2/IGFBP2
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    23     23/40
## GO:0044423 GO:0044423           virion component     0      0/40
## GO:0110165 GO:0110165 cellular anatomical entity    40     40/40
##                                                                                                                                                                                                                                   geneID
## GO:0032991                                                                                           RB1/HSPA1A/AKT1/MTOR/ETS1/ARID1A/MYH9/CDKN1A/FOXO3/ATM/CASP8/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/NCOA3/YAP1/ITGA2/ERBB3/TGM2/TSC1
## GO:0044423                                                                                                                                                                                                                              
## GO:0110165 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/STAT5A/NCOA3/YAP1/ITGA2/MAPK1/GAB2/ANLN/ERBB3/IGFBP2/TGM2/G6PD/FASN/TSC1/TTF1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/41
## GO:0003824 GO:0003824           catalytic activity    26     26/41
## GO:0005198 GO:0005198 structural molecule activity     0      0/41
## GO:0005215 GO:0005215         transporter activity     2      2/41
## GO:0005488 GO:0005488                      binding    41     41/41
## GO:0009055 GO:0009055   electron transfer activity     0      0/41
##                                                                                                                                                                                                                                            geneID
## GO:0003774                                                                                                                                                                                                                                   MYH9
## GO:0003824                                                                                       HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/KRAS/NRAS/PTK2/PARP1/IGF1R/RAB25/CCND1/XIAP/CASP3/MSH6/PIK3CA/MAPK1/G6PD/TGM2/FASN/INPP4B/PRDX1
## GO:0005198                                                                                                                                                                                                                                       
## GO:0005215                                                                                                                                                                                                                             IGF1R/BCL2
## GO:0005488 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/PARP1/IGF1R/CCNE2/RAB25/CCND1/XIAP/STAT5A/BCL2/MYC/CASP3/BCL2L11/YAP1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ANLN/G6PD/TGM2/SQSTM1/FASN/INPP4B/TTF1/PRDX1
## GO:0009055                                                                                                                                                                                                                                       
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    16     16/41
## GO:0002376 GO:0002376 immune system process    25     25/41
## GO:0008152 GO:0008152     metabolic process    37     37/41
## GO:0009987 GO:0009987      cellular process    41     41/41
## GO:0016032 GO:0016032         viral process     4      4/41
## GO:0022414 GO:0022414  reproductive process    16     16/41
##                                                                                                                                                                                                                                            geneID
## GO:0000003                                                                                                                                             AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/PARP1/IGF1R/CCNE2/BCL2/CASP3/BCL2L11/MSH6/ITGA2/PIK3CA
## GO:0002376                                                                                         HSPA1A/AKT1/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/ETS1/PARP1/IGF1R/XIAP/BCL2/MYC/CASP3/BCL2L11/MSH6/ITGA2/PIK3CA/MAPK1/G6PD/SQSTM1/PRDX1
## GO:0008152                         HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/PTK2/ETS1/PARP1/IGF1R/CCNE2/CCND1/XIAP/STAT5A/BCL2/MYC/CASP3/YAP1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/G6PD/TGM2/SQSTM1/FASN/INPP4B/TTF1/PRDX1
## GO:0009987 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/PARP1/IGF1R/CCNE2/RAB25/CCND1/XIAP/STAT5A/BCL2/MYC/CASP3/BCL2L11/YAP1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ANLN/G6PD/TGM2/SQSTM1/FASN/INPP4B/TTF1/PRDX1
## GO:0016032                                                                                                                                                                                                                 HSPA1A/AKT1/BCL2/ITGA2
## GO:0022414                                                                                                                                             AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/PARP1/IGF1R/CCNE2/BCL2/CASP3/BCL2L11/MSH6/ITGA2/PIK3CA
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    24     24/41
## GO:0044423 GO:0044423           virion component     0      0/41
## GO:0110165 GO:0110165 cellular anatomical entity    41     41/41
##                                                                                                                                                                                                                                            geneID
## GO:0032991                                                                                              HSPA1A/AKT1/MTOR/MYH9/CDKN1A/FOXO3/ATM/CASP8/ETS1/PARP1/IGF1R/CCNE2/CCND1/STAT5A/BCL2/MYC/CASP3/BCL2L11/YAP1/MSH6/ITGA2/PIK3CA/SRSF1/TGM2
## GO:0044423                                                                                                                                                                                                                                       
## GO:0110165 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/PARP1/IGF1R/CCNE2/RAB25/CCND1/XIAP/STAT5A/BCL2/MYC/CASP3/BCL2L11/YAP1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ANLN/G6PD/TGM2/SQSTM1/FASN/INPP4B/TTF1/PRDX1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0       0/3
## GO:0003824 GO:0003824           catalytic activity     2       2/3
## GO:0005198 GO:0005198 structural molecule activity     0       0/3
## GO:0005215 GO:0005215         transporter activity     0       0/3
## GO:0005488 GO:0005488                      binding     3       3/3
## GO:0009055 GO:0009055   electron transfer activity     0       0/3
##                        geneID
## GO:0003774                   
## GO:0003824        CDKN1A/TGM2
## GO:0005198                   
## GO:0005215                   
## GO:0005488 CDKN1A/STAT5A/TGM2
## GO:0009055                   
##                    ID           Description Count GeneRatio             geneID
## GO:0000003 GO:0000003          reproduction     0       0/3                   
## GO:0002376 GO:0002376 immune system process     1       1/3             CDKN1A
## GO:0008152 GO:0008152     metabolic process     3       3/3 CDKN1A/STAT5A/TGM2
## GO:0009987 GO:0009987      cellular process     3       3/3 CDKN1A/STAT5A/TGM2
## GO:0016032 GO:0016032         viral process     0       0/3                   
## GO:0022414 GO:0022414  reproductive process     0       0/3                   
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex     3       3/3
## GO:0044423 GO:0044423           virion component     0       0/3
## GO:0110165 GO:0110165 cellular anatomical entity     3       3/3
##                        geneID
## GO:0032991 CDKN1A/STAT5A/TGM2
## GO:0044423                   
## GO:0110165 CDKN1A/STAT5A/TGM2
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0      0/17
## GO:0003824 GO:0003824           catalytic activity    10     10/17
## GO:0005198 GO:0005198 structural molecule activity     1      1/17
## GO:0005215 GO:0005215         transporter activity     0      0/17
## GO:0005488 GO:0005488                      binding    17     17/17
## GO:0009055 GO:0009055   electron transfer activity     0      0/17
##                                                                                               geneID
## GO:0003774                                                                                          
## GO:0003824                                       XIAP/MAPK8/PTEN/KRAS/NRAS/PTK2/ATM/NCOA3/CCND1/G6PD
## GO:0005198                                                                                       FN1
## GO:0005215                                                                                          
## GO:0005488 ETS1/XIAP/MAPK8/ARID1A/BID/PTEN/KRAS/NRAS/PTK2/ATM/NCOA3/GAB2/ITGA2/IGFBP2/FN1/CCND1/G6PD
## GO:0009055                                                                                          
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     4      4/17
## GO:0002376 GO:0002376 immune system process    12     12/17
## GO:0008152 GO:0008152     metabolic process    14     14/17
## GO:0009987 GO:0009987      cellular process    17     17/17
## GO:0016032 GO:0016032         viral process     1      1/17
## GO:0022414 GO:0022414  reproductive process     4      4/17
##                                                                                               geneID
## GO:0000003                                                                     PTEN/ATM/ITGA2/IGFBP2
## GO:0002376                            ETS1/XIAP/MAPK8/ARID1A/BID/PTK2/ATM/GAB2/ITGA2/IGFBP2/FN1/G6PD
## GO:0008152                  ETS1/XIAP/MAPK8/ARID1A/BID/PTEN/KRAS/PTK2/ATM/NCOA3/ITGA2/FN1/CCND1/G6PD
## GO:0009987 ETS1/XIAP/MAPK8/ARID1A/BID/PTEN/KRAS/NRAS/PTK2/ATM/NCOA3/GAB2/ITGA2/IGFBP2/FN1/CCND1/G6PD
## GO:0016032                                                                                     ITGA2
## GO:0022414                                                                     PTEN/ATM/ITGA2/IGFBP2
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex     7      7/17
## GO:0044423 GO:0044423           virion component     0      0/17
## GO:0110165 GO:0110165 cellular anatomical entity    17     17/17
##                                                                                               geneID
## GO:0032991                                                     ETS1/ARID1A/ATM/NCOA3/ITGA2/FN1/CCND1
## GO:0044423                                                                                          
## GO:0110165 ETS1/XIAP/MAPK8/ARID1A/BID/PTEN/KRAS/NRAS/PTK2/ATM/NCOA3/GAB2/ITGA2/IGFBP2/FN1/CCND1/G6PD
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0      0/13
## GO:0003824 GO:0003824           catalytic activity     5      5/13
## GO:0005198 GO:0005198 structural molecule activity     1      1/13
## GO:0005215 GO:0005215         transporter activity     0      0/13
## GO:0005488 GO:0005488                      binding    13     13/13
## GO:0009055 GO:0009055   electron transfer activity     0      0/13
##                                                                           geneID
## GO:0003774                                                                      
## GO:0003824                                           XIAP/MAPK8/NCOA3/CCND1/FASN
## GO:0005198                                                                   FN1
## GO:0005215                                                                      
## GO:0005488 RB1/XIAP/ETS1/MAPK8/ARID1A/BID/YWHAZ/NCOA3/GAB2/FN1/CTNNB1/CCND1/FASN
## GO:0009055                                                                      
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     2      2/13
## GO:0002376 GO:0002376 immune system process    10     10/13
## GO:0008152 GO:0008152     metabolic process    12     12/13
## GO:0009987 GO:0009987      cellular process    13     13/13
## GO:0016032 GO:0016032         viral process     0      0/13
## GO:0022414 GO:0022414  reproductive process     2      2/13
##                                                                           geneID
## GO:0000003                                                            RB1/CTNNB1
## GO:0002376                  RB1/XIAP/ETS1/MAPK8/ARID1A/BID/YWHAZ/GAB2/FN1/CTNNB1
## GO:0008152      RB1/XIAP/ETS1/MAPK8/ARID1A/BID/YWHAZ/NCOA3/FN1/CTNNB1/CCND1/FASN
## GO:0009987 RB1/XIAP/ETS1/MAPK8/ARID1A/BID/YWHAZ/NCOA3/GAB2/FN1/CTNNB1/CCND1/FASN
## GO:0016032                                                                      
## GO:0022414                                                            RB1/CTNNB1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex     7      7/13
## GO:0044423 GO:0044423           virion component     0      0/13
## GO:0110165 GO:0110165 cellular anatomical entity    13     13/13
##                                                                           geneID
## GO:0032991                                RB1/ETS1/ARID1A/NCOA3/FN1/CTNNB1/CCND1
## GO:0044423                                                                      
## GO:0110165 RB1/XIAP/ETS1/MAPK8/ARID1A/BID/YWHAZ/NCOA3/GAB2/FN1/CTNNB1/CCND1/FASN
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/25
## GO:0003824 GO:0003824           catalytic activity    16     16/25
## GO:0005198 GO:0005198 structural molecule activity     1      1/25
## GO:0005215 GO:0005215         transporter activity     0      0/25
## GO:0005488 GO:0005488                      binding    25     25/25
## GO:0009055 GO:0009055   electron transfer activity     0      0/25
##                                                                                                                                            geneID
## GO:0003774                                                                                                                                   MYH9
## GO:0003824                                                  HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/KRAS/NRAS/PTK2/CCND1/MAPK1/TGM2/G6PD
## GO:0005198                                                                                                                                    FN1
## GO:0005215                                                                                                                                       
## GO:0005488 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/ANLN/FN1/TGM2/G6PD
## GO:0009055                                                                                                                                       
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     8      8/25
## GO:0002376 GO:0002376 immune system process    15     15/25
## GO:0008152 GO:0008152     metabolic process    23     23/25
## GO:0009987 GO:0009987      cellular process    25     25/25
## GO:0016032 GO:0016032         viral process     3      3/25
## GO:0022414 GO:0022414  reproductive process     8      8/25
##                                                                                                                                            geneID
## GO:0000003                                                                                              AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2
## GO:0002376                                                      HSPA1A/AKT1/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/ETS1/ITGA2/MAPK1/FN1/G6PD
## GO:0008152           HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/FN1/TGM2/G6PD
## GO:0009987 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/ANLN/FN1/TGM2/G6PD
## GO:0016032                                                                                                                      HSPA1A/AKT1/ITGA2
## GO:0022414                                                                                              AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    15     15/25
## GO:0044423 GO:0044423           virion component     0      0/25
## GO:0110165 GO:0110165 cellular anatomical entity    25     25/25
##                                                                                                                                            geneID
## GO:0032991                                                     HSPA1A/AKT1/MTOR/MYH9/CDKN1A/FOXO3/ATM/CASP8/ETS1/STAT5A/CCND1/YAP1/ITGA2/FN1/TGM2
## GO:0044423                                                                                                                                       
## GO:0110165 HSPA1A/AKT1/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/ETS1/STAT5A/CCND1/YAP1/ITGA2/MAPK1/ANLN/FN1/TGM2/G6PD
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/42
## GO:0003824 GO:0003824           catalytic activity    24     24/42
## GO:0005198 GO:0005198 structural molecule activity     1      1/42
## GO:0005215 GO:0005215         transporter activity     2      2/42
## GO:0005488 GO:0005488                      binding    42     42/42
## GO:0009055 GO:0009055   electron transfer activity     0      0/42
##                                                                                                                                                                                                                                                geneID
## GO:0003774                                                                                                                                                                                                                                       MYH9
## GO:0003824                                                                                                        MET/G6PD/KRAS/CCND1/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/NRAS/PTK2/PARP1/RAB25/CASP3/CHEK1/MSH6/PIK3CA/MAPK1/TGM2
## GO:0005198                                                                                                                                                                                                                                        FN1
## GO:0005215                                                                                                                                                                                                                                 BCL2/IGF1R
## GO:0005488 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/NRAS/PTK2/ETS1/PARP1/CCNE2/RAB25/STAT5A/MYC/CASP3/BCL2L11/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ANLN/CTNNB1/TGM2/GATA3
## GO:0009055                                                                                                                                                                                                                                           
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    19     19/42
## GO:0002376 GO:0002376 immune system process    26     26/42
## GO:0008152 GO:0008152     metabolic process    38     38/42
## GO:0009987 GO:0009987      cellular process    42     42/42
## GO:0016032 GO:0016032         viral process     4      4/42
## GO:0022414 GO:0022414  reproductive process    19     19/42
##                                                                                                                                                                                                                                                geneID
## GO:0000003                                                                                                                               ESR1/BCL2/AKT1/IGF1R/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/PARP1/CCNE2/CASP3/BCL2L11/MSH6/ITGA2/PIK3CA/CTNNB1/GATA3
## GO:0002376                                                                                         ESR1/G6PD/BCL2/AKT1/IGF1R/HSPA1A/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/ETS1/PARP1/MYC/CASP3/BCL2L11/FN1/MSH6/ITGA2/PIK3CA/MAPK1/CTNNB1/GATA3
## GO:0008152                         ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/PTK2/ETS1/PARP1/CCNE2/STAT5A/MYC/CASP3/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/CTNNB1/TGM2/GATA3
## GO:0009987 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/NRAS/PTK2/ETS1/PARP1/CCNE2/RAB25/STAT5A/MYC/CASP3/BCL2L11/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ANLN/CTNNB1/TGM2/GATA3
## GO:0016032                                                                                                                                                                                                                     BCL2/AKT1/HSPA1A/ITGA2
## GO:0022414                                                                                                                               ESR1/BCL2/AKT1/IGF1R/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/PARP1/CCNE2/CASP3/BCL2L11/MSH6/ITGA2/PIK3CA/CTNNB1/GATA3
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    31     31/42
## GO:0044423 GO:0044423           virion component     0      0/42
## GO:0110165 GO:0110165 cellular anatomical entity    42     42/42
##                                                                                                                                                                                                                                                geneID
## GO:0032991                                                           ESR1/MET/BCL2/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/MTOR/MYH9/CDKN1A/FOXO3/ATM/CASP8/ETS1/PARP1/CCNE2/STAT5A/MYC/CASP3/BCL2L11/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/SRSF1/CTNNB1/TGM2/GATA3
## GO:0044423                                                                                                                                                                                                                                           
## GO:0110165 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/NRAS/PTK2/ETS1/PARP1/CCNE2/RAB25/STAT5A/MYC/CASP3/BCL2L11/YAP1/CHEK1/FN1/MSH6/ITGA2/PIK3CA/MAPK1/SRSF1/ANLN/CTNNB1/TGM2/GATA3
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0       0/8
## GO:0003824 GO:0003824           catalytic activity     4       4/8
## GO:0005198 GO:0005198 structural molecule activity     0       0/8
## GO:0005215 GO:0005215         transporter activity     0       0/8
## GO:0005488 GO:0005488                      binding     8       8/8
## GO:0009055 GO:0009055   electron transfer activity     0       0/8
##                                                geneID
## GO:0003774                                           
## GO:0003824                      XIAP/MAPK8/NCOA3/TGM2
## GO:0005198                                           
## GO:0005215                                           
## GO:0005488 ETS1/XIAP/MAPK8/ARID1A/BID/NCOA3/GAB2/TGM2
## GO:0009055                                           
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     0       0/8
## GO:0002376 GO:0002376 immune system process     6       6/8
## GO:0008152 GO:0008152     metabolic process     7       7/8
## GO:0009987 GO:0009987      cellular process     8       8/8
## GO:0016032 GO:0016032         viral process     0       0/8
## GO:0022414 GO:0022414  reproductive process     0       0/8
##                                                geneID
## GO:0000003                                           
## GO:0002376            ETS1/XIAP/MAPK8/ARID1A/BID/GAB2
## GO:0008152      ETS1/XIAP/MAPK8/ARID1A/BID/NCOA3/TGM2
## GO:0009987 ETS1/XIAP/MAPK8/ARID1A/BID/NCOA3/GAB2/TGM2
## GO:0016032                                           
## GO:0022414                                           
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex     4       4/8
## GO:0044423 GO:0044423           virion component     0       0/8
## GO:0110165 GO:0110165 cellular anatomical entity     8       8/8
##                                                geneID
## GO:0032991                     ETS1/ARID1A/NCOA3/TGM2
## GO:0044423                                           
## GO:0110165 ETS1/XIAP/MAPK8/ARID1A/BID/NCOA3/GAB2/TGM2
##                    ID                  Description Count GeneRatio geneID
## GO:0003774 GO:0003774  cytoskeletal motor activity     0       0/1       
## GO:0003824 GO:0003824           catalytic activity     1       1/1   G6PD
## GO:0005198 GO:0005198 structural molecule activity     0       0/1       
## GO:0005215 GO:0005215         transporter activity     0       0/1       
## GO:0005488 GO:0005488                      binding     1       1/1   G6PD
## GO:0009055 GO:0009055   electron transfer activity     0       0/1       
##                    ID           Description Count GeneRatio geneID
## GO:0000003 GO:0000003          reproduction     0       0/1       
## GO:0002376 GO:0002376 immune system process     1       1/1   G6PD
## GO:0008152 GO:0008152     metabolic process     1       1/1   G6PD
## GO:0009987 GO:0009987      cellular process     1       1/1   G6PD
## GO:0016032 GO:0016032         viral process     0       0/1       
## GO:0022414 GO:0022414  reproductive process     0       0/1       
##                    ID                Description Count GeneRatio geneID
## GO:0032991 GO:0032991 protein-containing complex     0       0/1       
## GO:0044423 GO:0044423           virion component     0       0/1       
## GO:0110165 GO:0110165 cellular anatomical entity     1       1/1   G6PD
##                    ID                  Description Count GeneRatio geneID
## GO:0003774 GO:0003774  cytoskeletal motor activity     0       0/0       
## GO:0003824 GO:0003824           catalytic activity     0       0/0       
## GO:0005198 GO:0005198 structural molecule activity     0       0/0       
## GO:0005215 GO:0005215         transporter activity     0       0/0       
## GO:0005488 GO:0005488                      binding     0       0/0       
## GO:0009055 GO:0009055   electron transfer activity     0       0/0       
##                    ID           Description Count GeneRatio geneID
## GO:0000003 GO:0000003          reproduction     0       0/0       
## GO:0002376 GO:0002376 immune system process     0       0/0       
## GO:0008152 GO:0008152     metabolic process     0       0/0       
## GO:0009987 GO:0009987      cellular process     0       0/0       
## GO:0016032 GO:0016032         viral process     0       0/0       
## GO:0022414 GO:0022414  reproductive process     0       0/0       
##                    ID                Description Count GeneRatio geneID
## GO:0032991 GO:0032991 protein-containing complex     0       0/0       
## GO:0044423 GO:0044423           virion component     0       0/0       
## GO:0110165 GO:0110165 cellular anatomical entity     0       0/0       
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0       0/8
## GO:0003824 GO:0003824           catalytic activity     7       7/8
## GO:0005198 GO:0005198 structural molecule activity     1       1/8
## GO:0005215 GO:0005215         transporter activity     1       1/8
## GO:0005488 GO:0005488                      binding     8       8/8
## GO:0009055 GO:0009055   electron transfer activity     0       0/8
##                                                     geneID
## GO:0003774                                                
## GO:0003824       CCND1/PIK3R1/XIAP/CHEK1/IGF1R/TUBA1B/FASN
## GO:0005198                                          TUBA1B
## GO:0005215                                           IGF1R
## GO:0005488 CCND1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/TUBA1B/FASN
## GO:0009055                                                
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction     1       1/8
## GO:0002376 GO:0002376 immune system process     3       3/8
## GO:0008152 GO:0008152     metabolic process     7       7/8
## GO:0009987 GO:0009987      cellular process     8       8/8
## GO:0016032 GO:0016032         viral process     0       0/8
## GO:0022414 GO:0022414  reproductive process     1       1/8
##                                                     geneID
## GO:0000003                                           IGF1R
## GO:0002376                               PIK3R1/XIAP/IGF1R
## GO:0008152        CCND1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/FASN
## GO:0009987 CCND1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/TUBA1B/FASN
## GO:0016032                                                
## GO:0022414                                           IGF1R
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex     5       5/8
## GO:0044423 GO:0044423           virion component     0       0/8
## GO:0110165 GO:0110165 cellular anatomical entity     8       8/8
##                                                     geneID
## GO:0032991                  CCND1/PIK3R1/CHEK1/IGF1R/SRSF1
## GO:0044423                                                
## GO:0110165 CCND1/PIK3R1/XIAP/CHEK1/IGF1R/SRSF1/TUBA1B/FASN
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     0      0/57
## GO:0003824 GO:0003824           catalytic activity    25     25/57
## GO:0005198 GO:0005198 structural molecule activity     1      1/57
## GO:0005215 GO:0005215         transporter activity     2      2/57
## GO:0005488 GO:0005488                      binding    57     57/57
## GO:0009055 GO:0009055   electron transfer activity     0      0/57
##                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                            
## GO:0003824                                                                                                                                                                                        MET/BAP1/G6PD/KRAS/CCND1/AKT1/IGF1R/PTEN/EZH2/XIAP/MAPK8/NRAS/PTK2/ATM/CHEK2/NCOA3/AXL/CDKN1A/EGFR/CASP3/ASNS/CHEK1/RET/INPP4B/RAD50
## GO:0005198                                                                                                                                                                                                                                                                                                                         FN1
## GO:0005215                                                                                                                                                                                                                                                                                                                  BCL2/IGF1R
## GO:0005488 ESR1/MET/BAP1/ERRFI1/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/PTEN/CDKN1B/IRS1/MYC/JUN/BCL2L11/EZH2/SHC1/XIAP/ETS1/MAPK8/ARID1A/BID/NRAS/PTK2/ATM/YWHAZ/MAPT/CHEK2/NCOA3/AXL/CDKN1A/EGFR/CAV1/CASP3/ANXA1/TFF1/FOXO3/STAT3/ASNS/CHEK1/FOXM1/FN1/IGFBP2/ITGA2/RET/SQSTM1/CCNE2/GAB2/NDRG1/INPP4B/LCN2/RAD50/GATA3/CTNNB1/RBM15
## GO:0009055                                                                                                                                                                                                                                                                                                                            
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    20     20/57
## GO:0002376 GO:0002376 immune system process    36     36/57
## GO:0008152 GO:0008152     metabolic process    52     52/57
## GO:0009987 GO:0009987      cellular process    57     57/57
## GO:0016032 GO:0016032         viral process     7      7/57
## GO:0022414 GO:0022414  reproductive process    19     19/57
##                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0000003                                                                                                                                                                                                        ESR1/ERRFI1/BCL2/AKT1/IGF1R/PTEN/CDKN1B/BCL2L11/ATM/AXL/EGFR/CASP3/FOXO3/STAT3/IGFBP2/ITGA2/CCNE2/RAD50/GATA3/CTNNB1
## GO:0002376                                                                                                                       ESR1/BAP1/G6PD/BCL2/AKT1/IGF1R/MYC/BCL2L11/EZH2/XIAP/ETS1/MAPK8/ARID1A/BID/PTK2/ATM/YWHAZ/MAPT/AXL/CDKN1A/CAV1/CASP3/ANXA1/FOXO3/STAT3/FN1/IGFBP2/ITGA2/RET/SQSTM1/GAB2/NDRG1/LCN2/GATA3/CTNNB1/RBM15
## GO:0008152                                ESR1/MET/BAP1/ERRFI1/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/PTEN/CDKN1B/IRS1/MYC/JUN/EZH2/SHC1/XIAP/ETS1/MAPK8/ARID1A/BID/PTK2/ATM/YWHAZ/MAPT/CHEK2/NCOA3/AXL/CDKN1A/EGFR/CAV1/CASP3/ANXA1/TFF1/FOXO3/STAT3/ASNS/CHEK1/FOXM1/FN1/ITGA2/RET/SQSTM1/CCNE2/INPP4B/LCN2/RAD50/GATA3/CTNNB1/RBM15
## GO:0009987 ESR1/MET/BAP1/ERRFI1/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/PTEN/CDKN1B/IRS1/MYC/JUN/BCL2L11/EZH2/SHC1/XIAP/ETS1/MAPK8/ARID1A/BID/NRAS/PTK2/ATM/YWHAZ/MAPT/CHEK2/NCOA3/AXL/CDKN1A/EGFR/CAV1/CASP3/ANXA1/TFF1/FOXO3/STAT3/ASNS/CHEK1/FOXM1/FN1/IGFBP2/ITGA2/RET/SQSTM1/CCNE2/GAB2/NDRG1/INPP4B/LCN2/RAD50/GATA3/CTNNB1/RBM15
## GO:0016032                                                                                                                                                                                                                                                                                           BCL2/AKT1/JUN/AXL/EGFR/CAV1/ITGA2
## GO:0022414                                                                                                                                                                                                              ESR1/ERRFI1/BCL2/AKT1/IGF1R/PTEN/CDKN1B/BCL2L11/ATM/AXL/EGFR/CASP3/FOXO3/IGFBP2/ITGA2/CCNE2/RAD50/GATA3/CTNNB1
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    37     37/57
## GO:0044423 GO:0044423           virion component     0      0/57
## GO:0110165 GO:0110165 cellular anatomical entity    57     57/57
##                                                                                                                                                                                                                                                                                                                                 geneID
## GO:0032991                                                                                                                 ESR1/MET/BAP1/BCL2/CCND1/NOTCH3/AKT1/IGF1R/CDKN1B/IRS1/MYC/JUN/BCL2L11/EZH2/SHC1/ETS1/ARID1A/ATM/MAPT/NCOA3/AXL/CDKN1A/EGFR/CAV1/CASP3/FOXO3/STAT3/CHEK1/FOXM1/FN1/ITGA2/RET/CCNE2/RAD50/GATA3/CTNNB1/RBM15
## GO:0044423                                                                                                                                                                                                                                                                                                                            
## GO:0110165 ESR1/MET/BAP1/ERRFI1/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/PTEN/CDKN1B/IRS1/MYC/JUN/BCL2L11/EZH2/SHC1/XIAP/ETS1/MAPK8/ARID1A/BID/NRAS/PTK2/ATM/YWHAZ/MAPT/CHEK2/NCOA3/AXL/CDKN1A/EGFR/CAV1/CASP3/ANXA1/TFF1/FOXO3/STAT3/ASNS/CHEK1/FOXM1/FN1/IGFBP2/ITGA2/RET/SQSTM1/CCNE2/GAB2/NDRG1/INPP4B/LCN2/RAD50/GATA3/CTNNB1/RBM15
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/32
## GO:0003824 GO:0003824           catalytic activity    19     19/32
## GO:0005198 GO:0005198 structural molecule activity     1      1/32
## GO:0005215 GO:0005215         transporter activity     2      2/32
## GO:0005488 GO:0005488                      binding    32     32/32
## GO:0009055 GO:0009055   electron transfer activity     0      0/32
##                                                                                                                                                                                   geneID
## GO:0003774                                                                                                                                                                          MYH9
## GO:0003824                                                                         MET/G6PD/KRAS/CCND1/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/NRAS/PTK2/CHEK1/MAPK1/TGM2
## GO:0005198                                                                                                                                                                           FN1
## GO:0005215                                                                                                                                                                    BCL2/IGF1R
## GO:0005488 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/NRAS/PTK2/ETS1/STAT5A/YAP1/CHEK1/FN1/ITGA2/MAPK1/ANLN/ERBB3/TGM2
## GO:0009055                                                                                                                                                                              
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    11     11/32
## GO:0002376 GO:0002376 immune system process    18     18/32
## GO:0008152 GO:0008152     metabolic process    30     30/32
## GO:0009987 GO:0009987      cellular process    32     32/32
## GO:0016032 GO:0016032         viral process     4      4/32
## GO:0022414 GO:0022414  reproductive process    11     11/32
##                                                                                                                                                                                   geneID
## GO:0000003                                                                                                                     ESR1/BCL2/AKT1/IGF1R/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2
## GO:0002376                                                                             ESR1/G6PD/BCL2/AKT1/IGF1R/HSPA1A/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/ETS1/FN1/ITGA2/MAPK1
## GO:0008152           ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/PTK2/ETS1/STAT5A/YAP1/CHEK1/FN1/ITGA2/MAPK1/ERBB3/TGM2
## GO:0009987 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/NRAS/PTK2/ETS1/STAT5A/YAP1/CHEK1/FN1/ITGA2/MAPK1/ANLN/ERBB3/TGM2
## GO:0016032                                                                                                                                                        BCL2/AKT1/HSPA1A/ITGA2
## GO:0022414                                                                                                                     ESR1/BCL2/AKT1/IGF1R/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/ITGA2
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    22     22/32
## GO:0044423 GO:0044423           virion component     0      0/32
## GO:0110165 GO:0110165 cellular anatomical entity    32     32/32
##                                                                                                                                                                                   geneID
## GO:0032991                                                     ESR1/MET/BCL2/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/MTOR/MYH9/CDKN1A/FOXO3/ATM/CASP8/ETS1/STAT5A/YAP1/CHEK1/FN1/ITGA2/ERBB3/TGM2
## GO:0044423                                                                                                                                                                              
## GO:0110165 ESR1/MET/G6PD/BCL2/KRAS/CCND1/NOTCH3/AKT1/IGF1R/HSPA1A/VHL/MTOR/MAPK8/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/NRAS/PTK2/ETS1/STAT5A/YAP1/CHEK1/FN1/ITGA2/MAPK1/ANLN/ERBB3/TGM2
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/53
## GO:0003824 GO:0003824           catalytic activity    32     32/53
## GO:0005198 GO:0005198 structural molecule activity     1      1/53
## GO:0005215 GO:0005215         transporter activity     2      2/53
## GO:0005488 GO:0005488                      binding    53     53/53
## GO:0009055 GO:0009055   electron transfer activity     0      0/53
##                                                                                                                                                                                                                                                                                                               geneID
## GO:0003774                                                                                                                                                                                                                                                                                                      MYH9
## GO:0003824                                                                                                                      XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/KRAS/NRAS/PTK2/PARP1/IGF1R/RAB25/CCND1/PIK3R1/CHEK1/TUBA1B/NCOA3/CASP3/MSH6/PIK3CA/MAPK1/G6PD/MET/FASN/TGM2/BRCA2/INPP4B/PRDX1
## GO:0005198                                                                                                                                                                                                                                                                                                    TUBA1B
## GO:0005215                                                                                                                                                                                                                                                                                                IGF1R/BCL2
## GO:0005488 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/PARP1/IGF1R/CCNE2/RAB25/CCND1/PIK3R1/CHEK1/SRSF1/TUBA1B/STAT5A/CDKN1B/BCL2L11/BCL2/NCOA3/MYC/CASP3/YAP1/MSH6/ITGA2/PIK3CA/MAPK1/GAB2/ANLN/G6PD/MET/FASN/TGM2/PXN/SQSTM1/BRCA2/INPP4B/TTF1/PRDX1
## GO:0009055                                                                                                                                                                                                                                                                                                          
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    19     19/53
## GO:0002376 GO:0002376 immune system process    30     30/53
## GO:0008152 GO:0008152     metabolic process    46     46/53
## GO:0009987 GO:0009987      cellular process    53     53/53
## GO:0016032 GO:0016032         viral process     4      4/53
## GO:0022414 GO:0022414  reproductive process    19     19/53
##                                                                                                                                                                                                                                                                                                               geneID
## GO:0000003                                                                                                                                                                                               RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/PARP1/IGF1R/CCNE2/CDKN1B/BCL2L11/BCL2/CASP3/MSH6/ITGA2/PIK3CA/BRCA2
## GO:0002376                                                                                                                                 RB1/XIAP/HSPA1A/AKT1/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/PTK2/PARP1/IGF1R/PIK3R1/BCL2L11/BCL2/MYC/CASP3/MSH6/ITGA2/PIK3CA/MAPK1/GAB2/G6PD/SQSTM1/PRDX1
## GO:0008152                                         RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/PTK2/PARP1/IGF1R/CCNE2/CCND1/PIK3R1/CHEK1/SRSF1/STAT5A/CDKN1B/BCL2/NCOA3/MYC/CASP3/YAP1/MSH6/ITGA2/PIK3CA/MAPK1/G6PD/MET/FASN/TGM2/SQSTM1/BRCA2/INPP4B/TTF1/PRDX1
## GO:0009987 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/PARP1/IGF1R/CCNE2/RAB25/CCND1/PIK3R1/CHEK1/SRSF1/TUBA1B/STAT5A/CDKN1B/BCL2L11/BCL2/NCOA3/MYC/CASP3/YAP1/MSH6/ITGA2/PIK3CA/MAPK1/GAB2/ANLN/G6PD/MET/FASN/TGM2/PXN/SQSTM1/BRCA2/INPP4B/TTF1/PRDX1
## GO:0016032                                                                                                                                                                                                                                                                                    HSPA1A/AKT1/BCL2/ITGA2
## GO:0022414                                                                                                                                                                                               RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/PTEN/PARP1/IGF1R/CCNE2/CDKN1B/BCL2L11/BCL2/CASP3/MSH6/ITGA2/PIK3CA/BRCA2
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    33     33/53
## GO:0044423 GO:0044423           virion component     0      0/53
## GO:0110165 GO:0110165 cellular anatomical entity    53     53/53
##                                                                                                                                                                                                                                                                                                               geneID
## GO:0032991                                                                                                              RB1/HSPA1A/AKT1/MTOR/ETS1/ARID1A/MYH9/CDKN1A/FOXO3/ATM/CASP8/PARP1/IGF1R/CCNE2/CCND1/PIK3R1/CHEK1/SRSF1/STAT5A/CDKN1B/BCL2L11/BCL2/NCOA3/MYC/CASP3/YAP1/MSH6/ITGA2/PIK3CA/MET/TGM2/PXN/BRCA2
## GO:0044423                                                                                                                                                                                                                                                                                                          
## GO:0110165 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/PTEN/KRAS/NRAS/PTK2/PARP1/IGF1R/CCNE2/RAB25/CCND1/PIK3R1/CHEK1/SRSF1/TUBA1B/STAT5A/CDKN1B/BCL2L11/BCL2/NCOA3/MYC/CASP3/YAP1/MSH6/ITGA2/PIK3CA/MAPK1/GAB2/ANLN/G6PD/MET/FASN/TGM2/PXN/SQSTM1/BRCA2/INPP4B/TTF1/PRDX1
##                    ID                  Description Count GeneRatio
## GO:0003774 GO:0003774  cytoskeletal motor activity     1      1/58
## GO:0003824 GO:0003824           catalytic activity    28     28/58
## GO:0005198 GO:0005198 structural molecule activity     1      1/58
## GO:0005215 GO:0005215         transporter activity     1      1/58
## GO:0005488 GO:0005488                      binding    58     58/58
## GO:0009055 GO:0009055   electron transfer activity     0      0/58
##                                                                                                                                                                                                                                                                                                                                            geneID
## GO:0003774                                                                                                                                                                                                                                                                                                                                   MYH9
## GO:0003824                                                                                                                                                                          XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/CDKN1A/ATM/CASP8/CCND1/PIK3R1/CHEK1/IGF1R/TUBA1B/NRAS/PTEN/NCOA3/CASP9/CCNE1/MAPK9/RAF1/AKT2/PRKCA/MAPK1/MAPK3/FASN/TGM2/G6PD
## GO:0005198                                                                                                                                                                                                                                                                                                                                 TUBA1B
## GO:0005215                                                                                                                                                                                                                                                                                                                                  IGF1R
## GO:0005488 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/YWHAZ/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/NRAS/STAT5A/PTEN/NCOA3/E2F1/CASP9/CDKN2A/CCNE1/MAPK9/RAF1/AKT2/YAP1/BCL2L1/DVL3/SMAD3/PRKCA/MAPK1/MAPK3/GAB2/ANLN/AKT1S1/IGFBP2/GATA3/FASN/CTNNB1/TGM2/PXN/RPTOR/SQSTM1/G6PD/RBM15/TSC1/TTF1/AR/TFRC
## GO:0009055                                                                                                                                                                                                                                                                                                                                       
##                    ID           Description Count GeneRatio
## GO:0000003 GO:0000003          reproduction    15     15/58
## GO:0002376 GO:0002376 immune system process    33     33/58
## GO:0008152 GO:0008152     metabolic process    51     51/58
## GO:0009987 GO:0009987      cellular process    58     58/58
## GO:0016032 GO:0016032         viral process     3      3/58
## GO:0022414 GO:0022414  reproductive process    15     15/58
##                                                                                                                                                                                                                                                                                                                                            geneID
## GO:0000003                                                                                                                                                                                                                                                      RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/IGF1R/PTEN/CCNE1/BCL2L1/IGFBP2/GATA3/CTNNB1/AR
## GO:0002376                                                                                                                                           RB1/XIAP/HSPA1A/AKT1/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/YWHAZ/PIK3R1/IGF1R/MAPK9/RAF1/SMAD3/PRKCA/MAPK1/MAPK3/GAB2/IGFBP2/GATA3/CTNNB1/RPTOR/SQSTM1/G6PD/RBM15/TSC1/TFRC
## GO:0008152                                         RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/YWHAZ/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/PTEN/NCOA3/E2F1/CASP9/CDKN2A/CCNE1/MAPK9/RAF1/AKT2/YAP1/DVL3/SMAD3/PRKCA/MAPK1/MAPK3/AKT1S1/GATA3/FASN/CTNNB1/TGM2/RPTOR/SQSTM1/G6PD/RBM15/TSC1/TTF1/AR/TFRC
## GO:0009987 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/YWHAZ/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/NRAS/STAT5A/PTEN/NCOA3/E2F1/CASP9/CDKN2A/CCNE1/MAPK9/RAF1/AKT2/YAP1/BCL2L1/DVL3/SMAD3/PRKCA/MAPK1/MAPK3/GAB2/ANLN/AKT1S1/IGFBP2/GATA3/FASN/CTNNB1/TGM2/PXN/RPTOR/SQSTM1/G6PD/RBM15/TSC1/TTF1/AR/TFRC
## GO:0016032                                                                                                                                                                                                                                                                                                                       HSPA1A/AKT1/TFRC
## GO:0022414                                                                                                                                                                                                                                                      RB1/AKT1/MTOR/MYH9/FOXO3/ATM/CASP8/IGF1R/PTEN/CCNE1/BCL2L1/IGFBP2/GATA3/CTNNB1/AR
##                    ID                Description Count GeneRatio
## GO:0032991 GO:0032991 protein-containing complex    37     37/58
## GO:0044423 GO:0044423           virion component     0      0/58
## GO:0110165 GO:0110165 cellular anatomical entity    58     58/58
##                                                                                                                                                                                                                                                                                                                                            geneID
## GO:0032991                                                                                                                    RB1/HSPA1A/AKT1/MTOR/ETS1/ARID1A/MYH9/CDKN1A/FOXO3/ATM/CASP8/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/STAT5A/NCOA3/E2F1/CASP9/CDKN2A/CCNE1/YAP1/BCL2L1/DVL3/SMAD3/PRKCA/AKT1S1/GATA3/CTNNB1/TGM2/PXN/RPTOR/RBM15/TSC1/AR/TFRC
## GO:0044423                                                                                                                                                                                                                                                                                                                                       
## GO:0110165 RB1/XIAP/HSPA1A/AKT1/VHL/MTOR/MAPK8/ETS1/ARID1A/BID/MYH9/CDKN1A/FOXO3/ATM/CASP8/MACC1/YWHAZ/CCND1/PIK3R1/CHEK1/IGF1R/SRSF1/TUBA1B/NRAS/STAT5A/PTEN/NCOA3/E2F1/CASP9/CDKN2A/CCNE1/MAPK9/RAF1/AKT2/YAP1/BCL2L1/DVL3/SMAD3/PRKCA/MAPK1/MAPK3/GAB2/ANLN/AKT1S1/IGFBP2/GATA3/FASN/CTNNB1/TGM2/PXN/RPTOR/SQSTM1/G6PD/RBM15/TSC1/TTF1/AR/TFRC
barplot(ggo_MF[[1]], title = "groupGO, Molecular Function, Bicluster 1 of 1")

barplot(ggo_MF[[2]], title = "groupGO, Molecular Function, Bicluster 1 of 2")

barplot(ggo_MF[[3]], title = "groupGO, Molecular Function, Bicluster 2 of 2")

barplot(ggo_MF[[4]], title = "groupGO, Molecular Function, Bicluster 1 of 3")

barplot(ggo_MF[[5]], title = "groupGO, Molecular Function, Bicluster 2 of 3")

barplot(ggo_MF[[6]], title = "groupGO, Molecular Function, Bicluster 3 of 3")

barplot(ggo_MF[[7]], title = "groupGO, Molecular Function, Bicluster 1 of 5")

barplot(ggo_MF[[8]], title = "groupGO, Molecular Function, Bicluster 2 of 5")

barplot(ggo_MF[[9]], title = "groupGO, Molecular Function, Bicluster 3 of 5")

barplot(ggo_MF[[10]], title = "groupGO, Molecular Function, Bicluster 4 of 5")

barplot(ggo_MF[[11]], title = "groupGO, Molecular Function, Bicluster 5 of 5")

barplot(ggo_MF[[12]], title = "groupGO, Molecular Function, Bicluster 1 of 10")

barplot(ggo_MF[[13]], title = "groupGO, Molecular Function, Bicluster 2 of 10")

barplot(ggo_MF[[14]], title = "groupGO, Molecular Function, Bicluster 3 of 10")

barplot(ggo_MF[[15]], title = "groupGO, Molecular Function, Bicluster 4 of 10")

barplot(ggo_MF[[16]], title = "groupGO, Molecular Function, Bicluster 5 of 10")

barplot(ggo_MF[[17]], title = "groupGO, Molecular Function, Bicluster 6 of 10")

barplot(ggo_MF[[18]], title = "groupGO, Molecular Function, Bicluster 7 of 10")

barplot(ggo_MF[[19]], title = "groupGO, Molecular Function, Bicluster 8 of 10")

barplot(ggo_MF[[20]], title = "groupGO, Molecular Function, Bicluster 9 of 10")

barplot(ggo_MF[[21]], title = "groupGO, Molecular Function, Bicluster 10 of 10")

barplot(ggo_BP[[1]], title = "groupGO, Biological Process, Bicluster 1 of 1")

barplot(ggo_BP[[2]], title = "groupGO, Biological Process, Bicluster 1 of 2")

barplot(ggo_BP[[3]], title = "groupGO, Biological Process, Bicluster 2 of 2")

barplot(ggo_BP[[4]], title = "groupGO, Biological Process, Bicluster 1 of 3")

barplot(ggo_BP[[5]], title = "groupGO, Biological Process, Bicluster 2 of 3")

barplot(ggo_BP[[6]], title = "groupGO, Biological Process, Bicluster 3 of 3")

barplot(ggo_BP[[7]], title = "groupGO, Biological Process, Bicluster 1 of 5")

barplot(ggo_BP[[8]], title = "groupGO, Biological Process, Bicluster 2 of 5")

barplot(ggo_BP[[9]], title = "groupGO, Biological Process, Bicluster 3 of 5")

barplot(ggo_BP[[10]], title = "groupGO, Biological Process, Bicluster 4 of 5")

barplot(ggo_BP[[11]], title = "groupGO, Biological Process, Bicluster 5 of 5")

barplot(ggo_BP[[12]], title = "groupGO, Biological Process, Bicluster 1 of 10")

barplot(ggo_BP[[13]], title = "groupGO, Biological Process, Bicluster 2 of 10")

barplot(ggo_BP[[14]], title = "groupGO, Biological Process, Bicluster 3 of 10")

barplot(ggo_BP[[15]], title = "groupGO, Biological Process, Bicluster 4 of 10")

barplot(ggo_BP[[16]], title = "groupGO, Biological Process, Bicluster 5 of 10")

barplot(ggo_BP[[17]], title = "groupGO, Biological Process, Bicluster 6 of 10")

barplot(ggo_BP[[18]], title = "groupGO, Biological Process, Bicluster 7 of 10")

barplot(ggo_BP[[19]], title = "groupGO, Biological Process, Bicluster 8 of 10")

barplot(ggo_BP[[20]], title = "groupGO, Biological Process, Bicluster 9 of 10")

barplot(ggo_BP[[21]], title = "groupGO, Biological Process, Bicluster 10 of 10")

barplot(ggo_CC[[1]], title = "groupGO, Cellular Component, Bicluster 1 of 1")

barplot(ggo_CC[[2]], title = "groupGO, Cellular Component, Bicluster 1 of 2")

barplot(ggo_CC[[3]], title = "groupGO, Cellular Component, Bicluster 2 of 2")

barplot(ggo_CC[[4]], title = "groupGO, Cellular Component, Bicluster 1 of 3")

barplot(ggo_CC[[5]], title = "groupGO, Cellular Component, Bicluster 2 of 3")

barplot(ggo_CC[[6]], title = "groupGO, Cellular Component, Bicluster 3 of 3")

barplot(ggo_CC[[7]], title = "groupGO, Cellular Component, Bicluster 1 of 5")

barplot(ggo_CC[[8]], title = "groupGO, Cellular Component, Bicluster 2 of 5")

barplot(ggo_CC[[9]], title = "groupGO, Cellular Component, Bicluster 3 of 5")

barplot(ggo_CC[[10]], title = "groupGO, Cellular Component, Bicluster 4 of 5")

barplot(ggo_CC[[11]], title = "groupGO, Cellular Component, Bicluster 5 of 5")

barplot(ggo_CC[[12]], title = "groupGO, Cellular Component, Bicluster 1 of 10")

barplot(ggo_CC[[13]], title = "groupGO, Cellular Component, Bicluster 2 of 10")

barplot(ggo_CC[[14]], title = "groupGO, Cellular Component, Bicluster 3 of 10")

barplot(ggo_CC[[15]], title = "groupGO, Cellular Component, Bicluster 4 of 10")

barplot(ggo_CC[[16]], title = "groupGO, Cellular Component, Bicluster 5 of 10")

barplot(ggo_CC[[17]], title = "groupGO, Cellular Component, Bicluster 6 of 10")

barplot(ggo_CC[[18]], title = "groupGO, Cellular Component, Bicluster 7 of 10")

barplot(ggo_CC[[19]], title = "groupGO, Cellular Component, Bicluster 8 of 10")

barplot(ggo_CC[[20]], title = "groupGO, Cellular Component, Bicluster 9 of 10")

barplot(ggo_CC[[21]], title = "groupGO, Cellular Component, Bicluster 10 of 10")

B. GO Over-Representation

ego_MF <- list()#GO enrichment of a geneset for Molecular Function
ego_BP <- list()#GO enrichment of a geneset for Biological Process
ego_CC <- list()#GO enrichment of a geneset for Cellular Component


for(z in 1:length(geneNames)){
  print(z)
  input <- geneNames[[z]]
  ego_MF[[z]] <- enrichGO(
    gene          = input,
    OrgDb         = org.Hs.eg.db,
    ont           = "MF",
    pAdjustMethod = "BH",
    keyType="SYMBOL",
    pvalueCutoff  = 0.05,
    qvalueCutoff  = 0.05,
    minGSSize     = 2,
    readable      = TRUE)
  
  ego_BP[[z]] <- enrichGO(
    gene          = input,
    OrgDb         = org.Hs.eg.db,
    ont           = "BP",
    pAdjustMethod = "BH",
    keyType="SYMBOL",
    pvalueCutoff  = 0.05,
    qvalueCutoff  = 0.05,
    minGSSize     = 2,
    readable      = TRUE)
  
  ego_CC[[z]] <- enrichGO(
    gene          = input,
    OrgDb         = org.Hs.eg.db,
    ont           = "CC",
    pAdjustMethod = "BH",
    keyType="SYMBOL",
    pvalueCutoff  = 0.05,
    qvalueCutoff  = 0.05,
    minGSSize     = 2,
    readable      = TRUE)
}
## [1] 1
## [1] 2
## [1] 3
## [1] 4
## [1] 5
## [1] 6
## [1] 7
## [1] 8
## [1] 9
## [1] 10
## [1] 11
## [1] 12
## [1] 13
## [1] 14
## [1] 15
## [1] 16
## --> No gene can be mapped....
## --> Expected input gene ID: XRCC1,RBBP8,MRE11,TMTC4,DPM1,PIGZ
## --> return NULL...
## --> No gene can be mapped....
## --> Expected input gene ID: LZTFL1,OR10J1,ZSCAN2,PAFAH1B1,KITLG,DMRTB1
## --> return NULL...
## --> No gene can be mapped....
## --> Expected input gene ID: ERCC1,MAP3K7,MBD3,HDAC8,TAF6,TADA1
## --> return NULL...
## [1] 17
## [1] 18
## [1] 19
## [1] 20
## [1] 21
for(z in 1:length(geneNames)){
  print(head(ego_MF[[z]]))
  print(head(ego_BP[[z]]))
  print(head(ego_CC[[z]]))
}
##                    ID                                        Description
## GO:0106310 GO:0106310                     protein serine kinase activity
## GO:0004674 GO:0004674           protein serine/threonine kinase activity
## GO:0004707 GO:0004707                                MAP kinase activity
## GO:0070064 GO:0070064                        proline-rich region binding
## GO:0042826 GO:0042826                        histone deacetylase binding
## GO:0030291 GO:0030291 protein serine/threonine kinase inhibitor activity
##            GeneRatio   BgRatio       pvalue    p.adjust      qvalue
## GO:0106310      5/24 363/18522 0.0000879512 0.009839616 0.004097469
## GO:0004674      5/24 427/18522 0.0001882293 0.009839616 0.004097469
## GO:0004707      2/24  16/18522 0.0001909646 0.009839616 0.004097469
## GO:0070064      2/24  17/18522 0.0002162553 0.009839616 0.004097469
## GO:0042826      3/24 128/18522 0.0005867501 0.021357704 0.008893896
## GO:0030291      2/24  37/18522 0.0010423909 0.024142433 0.010053529
##                               geneID Count
## GO:0106310 AKT1/MTOR/MAPK8/ATM/MAPK1     5
## GO:0004674 AKT1/MTOR/MAPK8/ATM/MAPK1     5
## GO:0004707               MAPK8/MAPK1     2
## GO:0070064                CCND1/YAP1     2
## GO:0042826        HSPA1A/MAPK8/CCND1     3
## GO:0030291               AKT1/CDKN1A     2
##                    ID                                 Description GeneRatio
## GO:0010631 GO:0010631                   epithelial cell migration      9/24
## GO:0090132 GO:0090132                        epithelium migration      9/24
## GO:0090130 GO:0090130                            tissue migration      9/24
## GO:0062197 GO:0062197        cellular response to chemical stress      8/24
## GO:0071214 GO:0071214       cellular response to abiotic stimulus      8/24
## GO:0104004 GO:0104004 cellular response to environmental stimulus      8/24
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0010631 375/18888 4.378338e-10 3.493448e-07 1.434282e-07
## GO:0090132 378/18888 4.697252e-10 3.493448e-07 1.434282e-07
## GO:0090130 383/18888 5.274456e-10 3.493448e-07 1.434282e-07
## GO:0062197 311/18888 2.888334e-09 1.434780e-06 5.890681e-07
## GO:0071214 334/18888 5.054206e-09 1.495343e-06 6.139332e-07
## GO:0104004 334/18888 5.054206e-09 1.495343e-06 6.139332e-07
##                                                     geneID Count
## GO:0010631 AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/ITGA2/ANLN     9
## GO:0090132 AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/ITGA2/ANLN     9
## GO:0090130 AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/ITGA2/ANLN     9
## GO:0062197     HSPA1A/AKT1/MTOR/MAPK8/FOXO3/ATM/MAPK1/G6PD     8
## GO:0071214     MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/YAP1/ITGA2     8
## GO:0104004     MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/YAP1/ITGA2     8
##                    ID                         Description GeneRatio   BgRatio
## GO:0005925 GO:0005925                      focal adhesion      7/24 421/19894
## GO:0030055 GO:0030055             cell-substrate junction      7/24 431/19894
## GO:0005826 GO:0005826         actomyosin contractile ring      2/24   4/19894
## GO:0009898 GO:0009898 cytoplasmic side of plasma membrane      4/24 161/19894
## GO:0070938 GO:0070938                    contractile ring      2/24  10/19894
## GO:0098562 GO:0098562        cytoplasmic side of membrane      4/24 199/19894
##                  pvalue     p.adjust       qvalue
## GO:0005925 4.585265e-07 3.409715e-05 1.921762e-05
## GO:0030055 5.369630e-07 3.409715e-05 1.921762e-05
## GO:0005826 8.356555e-06 3.537608e-04 1.993845e-04
## GO:0009898 3.869971e-05 1.228716e-03 6.925211e-04
## GO:0070938 6.239748e-05 1.584896e-03 8.932692e-04
## GO:0098562 8.823680e-05 1.867679e-03 1.052650e-03
##                                            geneID Count
## GO:0005925 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0030055 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0005826                              MYH9/ANLN     2
## GO:0009898                    MYH9/PTEN/KRAS/G6PD     4
## GO:0070938                              MYH9/ANLN     2
## GO:0098562                    MYH9/PTEN/KRAS/G6PD     4
##                    ID                              Description GeneRatio
## GO:0019903 GO:0019903              protein phosphatase binding      5/26
## GO:0140297 GO:0140297 DNA-binding transcription factor binding      7/26
## GO:0019902 GO:0019902                      phosphatase binding      5/26
## GO:0001221 GO:0001221        transcription coregulator binding      4/26
## GO:0016922 GO:0016922                 nuclear receptor binding      4/26
## GO:0001222 GO:0001222        transcription corepressor binding      3/26
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0019903 142/18522 1.425899e-06 0.0002965870 0.0001380871
## GO:0140297 478/18522 3.136151e-06 0.0003261597 0.0001518557
## GO:0019902 189/18522 5.798930e-06 0.0004020591 0.0001871935
## GO:0001221 114/18522 1.832807e-05 0.0009530599 0.0004437323
## GO:0016922 136/18522 3.667174e-05 0.0010300946 0.0004795987
## GO:0001222  47/18522 3.821623e-05 0.0010300946 0.0004795987
##                                              geneID Count
## GO:0019903               MET/BCL2/MAPK8/PTK2/CTNNB1     5
## GO:0140297 ESR1/BCL2/ETS1/ARID1A/YWHAZ/NCOA3/CTNNB1     7
## GO:0019902               MET/BCL2/MAPK8/PTK2/CTNNB1     5
## GO:0001221                   ESR1/ETS1/FOXO3/CTNNB1     4
## GO:0016922                 ESR1/ARID1A/NCOA3/CTNNB1     4
## GO:0001222                         ESR1/ETS1/CTNNB1     3
##                    ID                                         Description
## GO:0051402 GO:0051402                            neuron apoptotic process
## GO:2000045 GO:2000045 regulation of G1/S transition of mitotic cell cycle
## GO:1902806 GO:1902806      regulation of cell cycle G1/S phase transition
## GO:1901990 GO:1901990   regulation of mitotic cell cycle phase transition
## GO:0000082 GO:0000082               G1/S transition of mitotic cell cycle
## GO:0043523 GO:0043523              regulation of neuron apoptotic process
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0051402      9/26 292/18888 1.106898e-10 2.477237e-07 9.798956e-08
## GO:2000045      7/26 185/18888 4.338048e-09 4.854276e-06 1.920157e-06
## GO:1902806      7/26 211/18888 1.079622e-08 8.053980e-06 3.185832e-06
## GO:1901990      8/26 356/18888 1.710620e-08 9.570921e-06 3.785873e-06
## GO:0000082      7/26 234/18888 2.204334e-08 9.866597e-06 3.902831e-06
## GO:0043523      7/26 244/18888 2.939457e-08 1.096418e-05 4.336988e-06
##                                                    geneID Count
## GO:0051402 G6PD/BCL2/KRAS/CCND1/XIAP/BID/ATM/FOXO3/CTNNB1     9
## GO:2000045            BCL2/CCND1/AKT1/ARID1A/BID/PTEN/ATM     7
## GO:1902806            BCL2/CCND1/AKT1/ARID1A/BID/PTEN/ATM     7
## GO:1901990      BCL2/CCND1/AKT1/ARID1A/BID/PTEN/ATM/CHEK1     8
## GO:0000082            BCL2/CCND1/AKT1/ARID1A/BID/PTEN/ATM     7
## GO:0043523          G6PD/BCL2/KRAS/CCND1/ATM/FOXO3/CTNNB1     7
##                    ID                                       Description
## GO:0017053 GO:0017053                   transcription repressor complex
## GO:0090571 GO:0090571 RNA polymerase II transcription repressor complex
## GO:0005741 GO:0005741                      mitochondrial outer membrane
## GO:0005925 GO:0005925                                    focal adhesion
## GO:0030055 GO:0030055                           cell-substrate junction
## GO:0031968 GO:0031968                          organelle outer membrane
##            GeneRatio   BgRatio       pvalue    p.adjust    qvalue
## GO:0017053      3/26  77/19894 0.0001359483 0.005897502 0.0033461
## GO:0090571      2/26  15/19894 0.0001706628 0.005897502 0.0033461
## GO:0005741      4/26 219/19894 0.0001766044 0.005897502 0.0033461
## GO:0005925      5/26 421/19894 0.0001888698 0.005897502 0.0033461
## GO:0030055      5/26 431/19894 0.0002106347 0.005897502 0.0033461
## GO:0031968      4/26 248/19894 0.0002839739 0.005897502 0.0033461
##                                  geneID Count
## GO:0017053           CCND1/FOXO3/CTNNB1     3
## GO:0090571                 FOXO3/CTNNB1     2
## GO:0005741          BCL2/KRAS/BID/FOXO3     4
## GO:0005925 KRAS/PTK2/YWHAZ/ITGA2/CTNNB1     5
## GO:0030055 KRAS/PTK2/YWHAZ/ITGA2/CTNNB1     5
## GO:0031968          BCL2/KRAS/BID/FOXO3     4
##                    ID                              Description GeneRatio
## GO:0031625 GO:0031625         ubiquitin protein ligase binding      7/39
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding      7/39
## GO:0097718 GO:0097718       disordered domain specific binding      3/39
## GO:0051219 GO:0051219                   phosphoprotein binding      4/39
## GO:0043559 GO:0043559                          insulin binding      2/39
## GO:0140297 GO:0140297 DNA-binding transcription factor binding      7/39
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0031625 305/18522 2.999855e-06 0.0006097502 0.0002586178
## GO:0044389 324/18522 4.467034e-06 0.0006097502 0.0002586178
## GO:0097718  32/18522 4.103709e-05 0.0023493747 0.0009964574
## GO:0051219  93/18522 4.281994e-05 0.0023493747 0.0009964574
## GO:0043559   5/18522 4.302884e-05 0.0023493747 0.0009964574
## GO:0140297 478/18522 5.486105e-05 0.0024961776 0.0010587219
##                                               geneID Count
## GO:0031625 RB1/HSPA1A/BID/CDKN1A/CASP8/TUBA1B/SQSTM1     7
## GO:0044389 RB1/HSPA1A/BID/CDKN1A/CASP8/TUBA1B/SQSTM1     7
## GO:0097718                          RB1/HSPA1A/NCOA3     3
## GO:0051219                     RB1/MTOR/PIK3R1/MAPK1     4
## GO:0043559                              PIK3R1/IGF1R     2
## GO:0140297     RB1/VHL/ETS1/ARID1A/STAT5A/NCOA3/YAP1     7
##                    ID                                         Description
## GO:0030099 GO:0030099                        myeloid cell differentiation
## GO:0071214 GO:0071214               cellular response to abiotic stimulus
## GO:0104004 GO:0104004         cellular response to environmental stimulus
## GO:1901990 GO:1901990   regulation of mitotic cell cycle phase transition
## GO:2000045 GO:2000045 regulation of G1/S transition of mitotic cell cycle
## GO:0051402 GO:0051402                            neuron apoptotic process
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0030099     13/39 439/18888 2.271039e-12 5.339213e-09 2.471847e-09
## GO:0071214     11/39 334/18888 4.834683e-11 3.788780e-08 1.754057e-08
## GO:0104004     11/39 334/18888 4.834683e-11 3.788780e-08 1.754057e-08
## GO:1901990     10/39 356/18888 1.950902e-09 1.146642e-06 5.308506e-07
## GO:2000045      8/39 185/18888 3.454398e-09 1.624258e-06 7.519679e-07
## GO:0051402      9/39 292/18888 6.294494e-09 2.466393e-06 1.141843e-06
##                                                                              geneID
## GO:0030099 RB1/HSPA1A/MTOR/ETS1/MYH9/FOXO3/CASP8/PIK3R1/STAT5A/GAB2/G6PD/RBM15/FASN
## GO:0071214           MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PIK3R1/CHEK1/IGF1R/YAP1/ITGA2
## GO:0104004           MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PIK3R1/CHEK1/IGF1R/YAP1/ITGA2
## GO:1901990                     RB1/AKT1/ARID1A/BID/CDKN1A/ATM/PTEN/CCND1/CHEK1/ANLN
## GO:2000045                                RB1/AKT1/ARID1A/BID/CDKN1A/ATM/PTEN/CCND1
## GO:0051402                             RB1/XIAP/BID/FOXO3/ATM/CASP8/KRAS/CCND1/G6PD
##            Count
## GO:0030099    13
## GO:0071214    11
## GO:0104004    11
## GO:1901990    10
## GO:2000045     8
## GO:0051402     9
##                    ID                  Description GeneRatio   BgRatio
## GO:0005925 GO:0005925               focal adhesion      7/39 421/19894
## GO:0030055 GO:0030055      cell-substrate junction      7/39 431/19894
## GO:0005826 GO:0005826  actomyosin contractile ring      2/39   4/19894
## GO:0016605 GO:0016605                     PML body      4/39 108/19894
## GO:0005741 GO:0005741 mitochondrial outer membrane      5/39 219/19894
## GO:0031968 GO:0031968     organelle outer membrane      5/39 248/19894
##                  pvalue    p.adjust       qvalue
## GO:0005925 1.549331e-05 0.001382133 0.0007549631
## GO:0030055 1.802378e-05 0.001382133 0.0007549631
## GO:0005826 2.241297e-05 0.001382133 0.0007549631
## GO:0016605 5.836022e-05 0.002425454 0.0013248570
## GO:0005741 6.555282e-05 0.002425454 0.0013248570
## GO:0031968 1.177667e-04 0.003231777 0.0017652951
##                                            geneID Count
## GO:0005925 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0030055 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0005826                              MYH9/ANLN     2
## GO:0016605                   RB1/MTOR/PTEN/SQSTM1     4
## GO:0005741              MTOR/BID/FOXO3/CASP8/KRAS     5
## GO:0031968              MTOR/BID/FOXO3/CASP8/KRAS     5
##                    ID                              Description GeneRatio
## GO:0140297 GO:0140297 DNA-binding transcription factor binding     10/44
## GO:0019902 GO:0019902                      phosphatase binding      7/44
## GO:0031625 GO:0031625         ubiquitin protein ligase binding      8/44
## GO:0044389 GO:0044389    ubiquitin-like protein ligase binding      8/44
## GO:0019903 GO:0019903              protein phosphatase binding      6/44
## GO:0019887 GO:0019887        protein kinase regulator activity      7/44
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0140297 478/18522 1.347502e-07 3.907755e-05 1.673739e-05
## GO:0019902 189/18522 2.870435e-07 4.162131e-05 1.782691e-05
## GO:0031625 305/18522 5.222688e-07 5.048598e-05 2.162376e-05
## GO:0044389 324/18522 8.238420e-07 5.516999e-05 2.362998e-05
## GO:0019903 142/18522 1.014288e-06 5.516999e-05 2.362998e-05
## GO:0019887 232/18522 1.141448e-06 5.516999e-05 2.362998e-05
##                                                           geneID Count
## GO:0140297 ESR1/BCL2/VHL/ETS1/PARP1/YWHAZ/STAT5A/MYC/YAP1/CTNNB1    10
## GO:0019902                 MET/BCL2/MAPK8/PTK2/MAPK1/CDH2/CTNNB1     7
## GO:0031625     BCL2/HSPA1A/CDKN1A/CASP8/PARP1/YWHAZ/ERBB3/CTNNB1     8
## GO:0044389     BCL2/HSPA1A/CDKN1A/CASP8/PARP1/YWHAZ/ERBB3/CTNNB1     8
## GO:0019903                       MET/BCL2/MAPK8/PTK2/CDH2/CTNNB1     6
## GO:0019887            CCND1/AKT1/CDKN1A/CCNE2/CASP3/PIK3CA/ERBB3     7
##                    ID                                 Description GeneRatio
## GO:0043523 GO:0043523      regulation of neuron apoptotic process     13/44
## GO:0071214 GO:0071214       cellular response to abiotic stimulus     14/44
## GO:0104004 GO:0104004 cellular response to environmental stimulus     14/44
## GO:0051402 GO:0051402                    neuron apoptotic process     13/44
## GO:0048732 GO:0048732                           gland development     14/44
## GO:0001667 GO:0001667               ameboidal-type cell migration     14/44
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0043523 244/18888 7.372691e-15 1.499850e-11 6.010986e-12
## GO:0071214 334/18888 1.587702e-14 1.499850e-11 6.010986e-12
## GO:0104004 334/18888 1.587702e-14 1.499850e-11 6.010986e-12
## GO:0051402 292/18888 7.463526e-14 5.287908e-11 2.119248e-11
## GO:0048732 449/18888 9.024913e-13 5.115321e-10 2.050080e-10
## GO:0001667 498/18888 3.645943e-12 1.713589e-09 6.867596e-10
##                                                                                      geneID
## GO:0043523     G6PD/BCL2/KRAS/CCND1/FOXO3/ATM/CASP8/PARP1/CASP3/BCL2L11/PIK3CA/ERBB3/CTNNB1
## GO:0071214   IGF1R/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PARP1/MYC/CASP3/YAP1/CHEK1/ITGA2/PIK3CA
## GO:0104004   IGF1R/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PARP1/MYC/CASP3/YAP1/CHEK1/ITGA2/PIK3CA
## GO:0051402     G6PD/BCL2/KRAS/CCND1/FOXO3/ATM/CASP8/PARP1/CASP3/BCL2L11/PIK3CA/ERBB3/CTNNB1
## GO:0048732 ESR1/MET/BCL2/CCND1/AKT1/ATM/STAT5A/BCL2L11/ITGA2/PIK3CA/MAPK1/SRSF1/CTNNB1/TGM2
## GO:0001667        MET/AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/RAB25/STAT5A/FN1/ITGA2/PIK3CA/ANLN/CDH2
##            Count
## GO:0043523    13
## GO:0071214    14
## GO:0104004    14
## GO:0051402    13
## GO:0048732    14
## GO:0001667    14
##                    ID                                       Description
## GO:0005925 GO:0005925                                    focal adhesion
## GO:0030055 GO:0030055                           cell-substrate junction
## GO:0090571 GO:0090571 RNA polymerase II transcription repressor complex
## GO:0005741 GO:0005741                      mitochondrial outer membrane
## GO:0031968 GO:0031968                          organelle outer membrane
## GO:0019867 GO:0019867                                    outer membrane
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925     10/44 421/19894 2.113139e-08 2.676647e-06 1.263028e-06
## GO:0030055     10/44 431/19894 2.637091e-08 2.676647e-06 1.263028e-06
## GO:0090571      3/44  15/19894 4.508384e-06 3.050673e-04 1.439519e-04
## GO:0005741      6/44 219/19894 8.272627e-06 4.198358e-04 1.981077e-04
## GO:0031968      6/44 248/19894 1.677033e-05 5.937494e-04 2.801721e-04
## GO:0019867      6/44 250/19894 1.754924e-05 5.937494e-04 2.801721e-04
##                                                              geneID Count
## GO:0005925 KRAS/HSPA1A/MYH9/PTK2/YWHAZ/ITGA2/MAPK1/CDH2/CTNNB1/TGM2    10
## GO:0030055 KRAS/HSPA1A/MYH9/PTK2/YWHAZ/ITGA2/MAPK1/CDH2/CTNNB1/TGM2    10
## GO:0090571                                         FOXO3/MYC/CTNNB1     3
## GO:0005741                       BCL2/KRAS/MTOR/FOXO3/CASP8/BCL2L11     6
## GO:0031968                       BCL2/KRAS/MTOR/FOXO3/CASP8/BCL2L11     6
## GO:0019867                       BCL2/KRAS/MTOR/FOXO3/CASP8/BCL2L11     6
##                    ID
## GO:0043559 GO:0043559
## GO:0120283 GO:0120283
## GO:0043560 GO:0043560
## GO:0140993 GO:0140993
## GO:0004707 GO:0004707
## GO:0005068 GO:0005068
##                                                                Description
## GO:0043559                                                 insulin binding
## GO:0120283                         protein serine/threonine kinase binding
## GO:0043560                              insulin receptor substrate binding
## GO:0140993                                      histone modifying activity
## GO:0004707                                             MAP kinase activity
## GO:0005068 transmembrane receptor protein tyrosine kinase adaptor activity
##            GeneRatio   BgRatio       pvalue    p.adjust      qvalue
## GO:0043559      2/26   5/18522 1.889884e-05 0.003458487 0.001511907
## GO:0120283      2/26   7/18522 3.961902e-05 0.003625141 0.001584761
## GO:0043560      2/26  13/18522 1.463956e-04 0.006650055 0.002907128
## GO:0140993      4/26 207/18522 1.868027e-04 0.006650055 0.002907128
## GO:0004707      2/26  16/18522 2.246413e-04 0.006650055 0.002907128
## GO:0005068      2/26  17/18522 2.543737e-04 0.006650055 0.002907128
##                          geneID Count
## GO:0043559         PIK3R1/IGF1R     2
## GO:0120283           XIAP/MAPK8     2
## GO:0043560         PIK3R1/IGF1R     2
## GO:0140993 ATM/CHEK1/NCOA3/TGM2     4
## GO:0004707          MAPK8/MAPK1     2
## GO:0005068          PIK3R1/GAB2     2
##                    ID                                   Description GeneRatio
## GO:0030099 GO:0030099                  myeloid cell differentiation      9/26
## GO:0071214 GO:0071214         cellular response to abiotic stimulus      8/26
## GO:0104004 GO:0104004   cellular response to environmental stimulus      8/26
## GO:0051402 GO:0051402                      neuron apoptotic process      7/26
## GO:0042770 GO:0042770 signal transduction in response to DNA damage      6/26
## GO:0071496 GO:0071496        cellular response to external stimulus      7/26
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0030099 439/18888 4.013892e-09 5.458224e-06 2.662727e-06
## GO:0071214 334/18888 1.040984e-08 5.458224e-06 2.662727e-06
## GO:0104004 334/18888 1.040984e-08 5.458224e-06 2.662727e-06
## GO:0051402 292/18888 1.004486e-07 3.950139e-05 1.927026e-05
## GO:0042770 188/18888 1.751351e-07 5.509752e-05 2.687864e-05
## GO:0071496 335/18888 2.552859e-07 6.692746e-05 3.264973e-05
##                                                        geneID Count
## GO:0030099 ETS1/MYH9/FOXO3/CASP8/PIK3R1/STAT5A/GAB2/G6PD/FASN     9
## GO:0071214     MAPK8/CDKN1A/ATM/CASP8/PIK3R1/CHEK1/IGF1R/YAP1     8
## GO:0104004     MAPK8/CDKN1A/ATM/CASP8/PIK3R1/CHEK1/IGF1R/YAP1     8
## GO:0051402                XIAP/BID/FOXO3/ATM/CASP8/CCND1/G6PD     7
## GO:0042770                   BID/CDKN1A/FOXO3/ATM/CCND1/CHEK1     6
## GO:0071496         MAPK8/CDKN1A/FOXO3/CASP8/CHEK1/IGF1R/MAPK1     7
##                    ID
## GO:0005826 GO:0005826
## GO:0070938 GO:0070938
## GO:0061695 GO:0061695
## GO:1902911 GO:1902911
## GO:0000307 GO:0000307
## GO:0070557 GO:0070557
##                                                               Description
## GO:0005826                                    actomyosin contractile ring
## GO:0070938                                               contractile ring
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:1902911                                         protein kinase complex
## GO:0000307             cyclin-dependent protein kinase holoenzyme complex
## GO:0070557                                               PCNA-p21 complex
##            GeneRatio   BgRatio       pvalue    p.adjust       qvalue
## GO:0005826      2/26   4/19894 9.838827e-06 0.001180659 0.0006524696
## GO:0070938      2/26  10/19894 7.343589e-05 0.004406154 0.0024349797
## GO:0061695      4/26 308/19894 6.436502e-04 0.025746006 0.0142280561
## GO:1902911      3/26 150/19894 9.618296e-04 0.028854888 0.0159461221
## GO:0000307      2/26  56/19894 2.421991e-03 0.032954906 0.0182119217
## GO:0070557      1/26   2/19894 2.612211e-03 0.032954906 0.0182119217
##                               geneID Count
## GO:0005826                 MYH9/ANLN     2
## GO:0070938                 MYH9/ANLN     2
## GO:0061695 CDKN1A/CCND1/PIK3R1/IGF1R     4
## GO:1902911        CDKN1A/CCND1/IGF1R     3
## GO:0000307              CDKN1A/CCND1     2
## GO:0070557                    CDKN1A     1
##                    ID
## GO:0140297 GO:0140297
## GO:0001221 GO:0001221
## GO:0061629 GO:0061629
## GO:0016922 GO:0016922
## GO:0001222 GO:0001222
## GO:0019903 GO:0019903
##                                                                    Description
## GO:0140297                            DNA-binding transcription factor binding
## GO:0001221                                   transcription coregulator binding
## GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding
## GO:0016922                                            nuclear receptor binding
## GO:0001222                                   transcription corepressor binding
## GO:0019903                                         protein phosphatase binding
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0140297      8/23 478/18522 6.472171e-08 1.106741e-05 4.837096e-06
## GO:0001221      5/23 114/18522 2.490429e-07 2.129317e-05 9.306340e-06
## GO:0061629      6/23 343/18522 2.986564e-06 1.702342e-04 7.440213e-05
## GO:0016922      4/23 136/18522 2.209533e-05 6.596016e-04 2.882838e-04
## GO:0001222      3/23  47/18522 2.617056e-05 6.596016e-04 2.882838e-04
## GO:0019903      4/23 142/18522 2.618056e-05 6.596016e-04 2.882838e-04
##                                                    geneID Count
## GO:0140297 ESR1/BCL2/ETS1/ARID1A/YWHAZ/NCOA3/CTNNB1/GATA3     8
## GO:0001221                   ESR1/ETS1/FOXO3/CTNNB1/GATA3     5
## GO:0061629            ESR1/ETS1/ARID1A/NCOA3/CTNNB1/GATA3     6
## GO:0016922                       ESR1/ARID1A/NCOA3/CTNNB1     4
## GO:0001222                               ESR1/ETS1/CTNNB1     3
## GO:0019903                          MET/BCL2/MAPK8/CTNNB1     4
##                    ID                            Description GeneRatio
## GO:0051402 GO:0051402               neuron apoptotic process      9/23
## GO:0048872 GO:0048872         homeostasis of number of cells      8/23
## GO:0043523 GO:0043523 regulation of neuron apoptotic process      7/23
## GO:1904019 GO:1904019      epithelial cell apoptotic process      6/23
## GO:1902893 GO:1902893      regulation of miRNA transcription      5/23
## GO:0061614 GO:0061614                    miRNA transcription      5/23
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0051402 292/18888 3.015195e-11 6.310803e-08 2.501025e-08
## GO:0048872 322/18888 2.567372e-09 2.686755e-06 1.064784e-06
## GO:0043523 244/18888 1.132333e-08 7.899909e-06 3.130801e-06
## GO:1904019 147/18888 1.815405e-08 9.499105e-06 3.764576e-06
## GO:1902893  75/18888 2.743477e-08 1.023597e-05 4.056601e-06
## GO:0061614  76/18888 2.934343e-08 1.023597e-05 4.056601e-06
##                                                      geneID Count
## GO:0051402 G6PD/BCL2/KRAS/CCND1/XIAP/BID/FOXO3/CTNNB1/GATA3     9
## GO:0048872        G6PD/BCL2/KRAS/AKT1/ETS1/XIAP/FOXO3/GATA3     8
## GO:0043523          G6PD/BCL2/KRAS/CCND1/FOXO3/CTNNB1/GATA3     7
## GO:1904019                  ESR1/BCL2/IGF1R/BID/FOXO3/GATA3     6
## GO:1902893                     ESR1/NOTCH3/ETS1/FOXO3/GATA3     5
## GO:0061614                     ESR1/NOTCH3/ETS1/FOXO3/GATA3     5
##                    ID                                       Description
## GO:0017053 GO:0017053                   transcription repressor complex
## GO:0005741 GO:0005741                      mitochondrial outer membrane
## GO:0090571 GO:0090571 RNA polymerase II transcription repressor complex
## GO:0031968 GO:0031968                          organelle outer membrane
## GO:0019867 GO:0019867                                    outer membrane
## GO:0000791 GO:0000791                                       euchromatin
##            GeneRatio   BgRatio       pvalue    p.adjust      qvalue
## GO:0017053      3/23  77/19894 9.337874e-05 0.004144173 0.002293961
## GO:0005741      4/23 219/19894 1.073470e-04 0.004144173 0.002293961
## GO:0090571      2/23  15/19894 1.330282e-04 0.004144173 0.002293961
## GO:0031968      4/23 248/19894 1.732117e-04 0.004144173 0.002293961
## GO:0019867      4/23 250/19894 1.786281e-04 0.004144173 0.002293961
## GO:0000791      2/23  61/19894 2.244738e-03 0.026807326 0.014838901
##                         geneID Count
## GO:0017053  CCND1/FOXO3/CTNNB1     3
## GO:0005741 BCL2/KRAS/BID/FOXO3     4
## GO:0090571        FOXO3/CTNNB1     2
## GO:0031968 BCL2/KRAS/BID/FOXO3     4
## GO:0019867 BCL2/KRAS/BID/FOXO3     4
## GO:0000791         ESR1/CTNNB1     2
##                    ID                           Description GeneRatio   BgRatio
## GO:0031625 GO:0031625      ubiquitin protein ligase binding      7/40 305/18522
## GO:0044389 GO:0044389 ubiquitin-like protein ligase binding      7/40 324/18522
## GO:0097718 GO:0097718    disordered domain specific binding      3/40  32/18522
## GO:0043125 GO:0043125         ErbB-3 class receptor binding      2/40   5/18522
## GO:0043559 GO:0043559                       insulin binding      2/40   5/18522
## GO:0051219 GO:0051219                phosphoprotein binding      4/40  93/18522
##                  pvalue     p.adjust       qvalue
## GO:0031625 3.585287e-06 0.0007227572 0.0003060032
## GO:0044389 5.334001e-06 0.0007227572 0.0003060032
## GO:0097718 4.431239e-05 0.0021406983 0.0009063357
## GO:0043125 4.528862e-05 0.0021406983 0.0009063357
## GO:0043559 4.528862e-05 0.0021406983 0.0009063357
## GO:0051219 4.739553e-05 0.0021406983 0.0009063357
##                                              geneID Count
## GO:0031625 RB1/HSPA1A/BID/CDKN1A/CASP8/TUBA1B/ERBB3     7
## GO:0044389 RB1/HSPA1A/BID/CDKN1A/CASP8/TUBA1B/ERBB3     7
## GO:0097718                         RB1/HSPA1A/NCOA3     3
## GO:0043125                             PIK3R1/ERBB3     2
## GO:0043559                             PIK3R1/IGF1R     2
## GO:0051219                    RB1/MTOR/PIK3R1/MAPK1     4
##                    ID                                       Description
## GO:0071214 GO:0071214             cellular response to abiotic stimulus
## GO:0104004 GO:0104004       cellular response to environmental stimulus
## GO:0030099 GO:0030099                      myeloid cell differentiation
## GO:0051402 GO:0051402                          neuron apoptotic process
## GO:0071496 GO:0071496            cellular response to external stimulus
## GO:1901990 GO:1901990 regulation of mitotic cell cycle phase transition
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0071214     11/40 334/18888 6.564127e-11 5.226059e-08 2.416486e-08
## GO:0104004     11/40 334/18888 6.564127e-11 5.226059e-08 2.416486e-08
## GO:0030099     12/40 439/18888 6.634861e-11 5.226059e-08 2.416486e-08
## GO:0051402     10/40 292/18888 3.763509e-10 2.223293e-07 1.028032e-07
## GO:0071496     10/40 335/18888 1.424577e-09 6.732551e-07 3.113076e-07
## GO:1901990     10/40 356/18888 2.557984e-09 1.007419e-06 4.658223e-07
##                                                                        geneID
## GO:0071214     MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PIK3R1/CHEK1/IGF1R/YAP1/ITGA2
## GO:0104004     MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PIK3R1/CHEK1/IGF1R/YAP1/ITGA2
## GO:0030099 RB1/HSPA1A/MTOR/ETS1/MYH9/FOXO3/CASP8/PIK3R1/STAT5A/GAB2/G6PD/FASN
## GO:0051402                 RB1/XIAP/BID/FOXO3/ATM/CASP8/KRAS/CCND1/ERBB3/G6PD
## GO:0071496         MTOR/MAPK8/CDKN1A/FOXO3/CASP8/CHEK1/IGF1R/ITGA2/MAPK1/TSC1
## GO:1901990               RB1/AKT1/ARID1A/BID/CDKN1A/ATM/PTEN/CCND1/CHEK1/ANLN
##            Count
## GO:0071214    11
## GO:0104004    11
## GO:0030099    12
## GO:0051402    10
## GO:0071496    10
## GO:1901990    10
##                    ID                  Description GeneRatio   BgRatio
## GO:0005925 GO:0005925               focal adhesion      7/40 421/19894
## GO:0030055 GO:0030055      cell-substrate junction      7/40 431/19894
## GO:0005826 GO:0005826  actomyosin contractile ring      2/40   4/19894
## GO:0005741 GO:0005741 mitochondrial outer membrane      5/40 219/19894
## GO:0031968 GO:0031968     organelle outer membrane      5/40 248/19894
## GO:0019867 GO:0019867               outer membrane      5/40 250/19894
##                  pvalue    p.adjust       qvalue
## GO:0005925 1.844060e-05 0.001368279 0.0007284243
## GO:0030055 2.144302e-05 0.001368279 0.0007284243
## GO:0005826 2.359102e-05 0.001368279 0.0007284243
## GO:0005741 7.425089e-05 0.003229914 0.0017194942
## GO:0031968 1.332324e-04 0.004011594 0.0021356340
## GO:0019867 1.383308e-04 0.004011594 0.0021356340
##                                            geneID Count
## GO:0005925 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0030055 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0005826                              MYH9/ANLN     2
## GO:0005741              MTOR/BID/FOXO3/CASP8/KRAS     5
## GO:0031968              MTOR/BID/FOXO3/CASP8/KRAS     5
## GO:0019867              MTOR/BID/FOXO3/CASP8/KRAS     5
##                    ID
## GO:0016538 GO:0016538
## GO:0019887 GO:0019887
## GO:0019207 GO:0019207
## GO:0106017 GO:0106017
## GO:0031625 GO:0031625
## GO:0097199 GO:0097199
##                                                                             Description
## GO:0016538          cyclin-dependent protein serine/threonine kinase regulator activity
## GO:0019887                                            protein kinase regulator activity
## GO:0019207                                                    kinase regulator activity
## GO:0106017                   phosphatidylinositol-3,4-bisphosphate phosphatase activity
## GO:0031625                                             ubiquitin protein ligase binding
## GO:0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway
##            GeneRatio   BgRatio       pvalue    p.adjust       qvalue
## GO:0016538      4/41  50/18522 4.420105e-06 0.001387913 0.0006513839
## GO:0019887      6/41 232/18522 1.128071e-05 0.001771072 0.0008312105
## GO:0019207      6/41 270/18522 2.659290e-05 0.002245393 0.0010538215
## GO:0106017      2/41   4/18522 2.860373e-05 0.002245393 0.0010538215
## GO:0031625      6/41 305/18522 5.253641e-05 0.002675883 0.0012558620
## GO:0097199      2/41   6/18522 7.130874e-05 0.002675883 0.0012558620
##                                           geneID Count
## GO:0016538              CDKN1A/CCNE2/CCND1/CASP3     4
## GO:0019887  AKT1/CDKN1A/CCNE2/CCND1/CASP3/PIK3CA     6
## GO:0019207  AKT1/CDKN1A/CCNE2/CCND1/CASP3/PIK3CA     6
## GO:0106017                           PTEN/INPP4B     2
## GO:0031625 HSPA1A/CDKN1A/CASP8/PARP1/BCL2/SQSTM1     6
## GO:0097199                           CASP8/CASP3     2
##                    ID                                 Description GeneRatio
## GO:0071214 GO:0071214       cellular response to abiotic stimulus     13/41
## GO:0104004 GO:0104004 cellular response to environmental stimulus     13/41
## GO:0051402 GO:0051402                    neuron apoptotic process     12/41
## GO:0062197 GO:0062197        cellular response to chemical stress     12/41
## GO:0043523 GO:0043523      regulation of neuron apoptotic process     11/41
## GO:0009411 GO:0009411                              response to UV      9/41
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0071214 334/18888 1.478774e-13 1.890612e-10 8.187738e-11
## GO:0104004 334/18888 1.478774e-13 1.890612e-10 8.187738e-11
## GO:0051402 292/18888 7.877682e-13 6.714411e-10 2.907832e-10
## GO:0062197 311/18888 1.656663e-12 1.059022e-09 4.586342e-10
## GO:0043523 244/18888 2.996446e-12 1.532382e-09 6.636339e-10
## GO:0009411 154/18888 3.527981e-11 1.503508e-08 6.511292e-09
##                                                                              geneID
## GO:0071214 MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PARP1/IGF1R/MYC/CASP3/YAP1/ITGA2/PIK3CA
## GO:0104004 MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PARP1/IGF1R/MYC/CASP3/YAP1/ITGA2/PIK3CA
## GO:0051402     FOXO3/ATM/CASP8/KRAS/PARP1/CCND1/XIAP/BCL2/CASP3/BCL2L11/PIK3CA/G6PD
## GO:0062197     HSPA1A/AKT1/MTOR/MAPK8/FOXO3/ATM/PARP1/CASP3/PIK3CA/MAPK1/G6PD/PRDX1
## GO:0043523          FOXO3/ATM/CASP8/KRAS/PARP1/CCND1/BCL2/CASP3/BCL2L11/PIK3CA/G6PD
## GO:0009411                        AKT1/MAPK8/CDKN1A/PARP1/CCND1/BCL2/MYC/CASP3/MSH6
##            Count
## GO:0071214    13
## GO:0104004    13
## GO:0051402    12
## GO:0062197    12
## GO:0043523    11
## GO:0009411     9
##                    ID                  Description GeneRatio   BgRatio
## GO:0005741 GO:0005741 mitochondrial outer membrane      6/41 219/19894
## GO:0031968 GO:0031968     organelle outer membrane      6/41 248/19894
## GO:0019867 GO:0019867               outer membrane      6/41 250/19894
## GO:0005925 GO:0005925               focal adhesion      7/41 421/19894
## GO:0005826 GO:0005826  actomyosin contractile ring      2/41   4/19894
## GO:0030055 GO:0030055      cell-substrate junction      7/41 431/19894
##                  pvalue     p.adjust       qvalue
## GO:0005741 5.416377e-06 0.0006806263 0.0003804869
## GO:0031968 1.102118e-05 0.0006806263 0.0003804869
## GO:0019867 1.153604e-05 0.0006806263 0.0003804869
## GO:0005925 2.183569e-05 0.0007487025 0.0004185432
## GO:0005826 2.479915e-05 0.0007487025 0.0004185432
## GO:0030055 2.537974e-05 0.0007487025 0.0004185432
##                                            geneID Count
## GO:0005741     MTOR/FOXO3/CASP8/KRAS/BCL2/BCL2L11     6
## GO:0031968     MTOR/FOXO3/CASP8/KRAS/BCL2/BCL2L11     6
## GO:0019867     MTOR/FOXO3/CASP8/KRAS/BCL2/BCL2L11     6
## GO:0005925 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0005826                              MYH9/ANLN     2
## GO:0030055 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
##                    ID
## GO:0003810 GO:0003810
## GO:0004861 GO:0004861
## GO:0140311 GO:0140311
## GO:0030332 GO:0030332
## GO:0030291 GO:0030291
## GO:0140313 GO:0140313
##                                                                    Description
## GO:0003810                protein-glutamine gamma-glutamyltransferase activity
## GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity
## GO:0140311                                       protein sequestering activity
## GO:0030332                                                      cyclin binding
## GO:0030291                  protein serine/threonine kinase inhibitor activity
## GO:0140313                                     molecular sequestering activity
##            GeneRatio  BgRatio      pvalue   p.adjust      qvalue geneID Count
## GO:0003810       1/3  9/18522 0.001457096 0.02525225 0.007156507   TGM2     1
## GO:0004861       1/3 12/18522 0.001942480 0.02525225 0.007156507 CDKN1A     1
## GO:0140311       1/3 29/18522 0.004690019 0.03000055 0.008502179 CDKN1A     1
## GO:0030332       1/3 34/18522 0.005497158 0.03000055 0.008502179 CDKN1A     1
## GO:0030291       1/3 37/18522 0.005981232 0.03000055 0.008502179 CDKN1A     1
## GO:0140313       1/3 49/18522 0.007915957 0.03000055 0.008502179 CDKN1A     1
##                    ID                                               Description
## GO:0018277 GO:0018277                                       protein deamination
## GO:1905179 GO:1905179 negative regulation of cardiac muscle tissue regeneration
## GO:1905178 GO:1905178          regulation of cardiac muscle tissue regeneration
## GO:0060605 GO:0060605                                     tube lumen cavitation
## GO:0060662 GO:0060662                                 salivary gland cavitation
## GO:0048638 GO:0048638                        regulation of developmental growth
##            GeneRatio   BgRatio       pvalue   p.adjust      qvalue
## GO:0018277       1/3   2/18888 0.0003176452 0.01661722 0.002905419
## GO:1905179       1/3   2/18888 0.0003176452 0.01661722 0.002905419
## GO:1905178       1/3   4/18888 0.0006352231 0.01661722 0.002905419
## GO:0060605       1/3   5/18888 0.0007939868 0.01661722 0.002905419
## GO:0060662       1/3   5/18888 0.0007939868 0.01661722 0.002905419
## GO:0048638       2/3 330/18888 0.0009024527 0.01661722 0.002905419
##                   geneID Count
## GO:0018277          TGM2     1
## GO:1905179        CDKN1A     1
## GO:1905178        CDKN1A     1
## GO:0060605          TGM2     1
## GO:0060662          TGM2     1
## GO:0048638 CDKN1A/STAT5A     2
##                    ID                                        Description
## GO:0070557 GO:0070557                                   PCNA-p21 complex
## GO:0000307 GO:0000307 cyclin-dependent protein kinase holoenzyme complex
## GO:0000786 GO:0000786                                         nucleosome
## GO:1902554 GO:1902554            serine/threonine protein kinase complex
## GO:1902911 GO:1902911                             protein kinase complex
##            GeneRatio   BgRatio       pvalue    p.adjust       qvalue geneID
## GO:0070557       1/3   2/19894 0.0003015833 0.003015833 0.0009523684 CDKN1A
## GO:0000307       1/3  56/19894 0.0084214303 0.042107152 0.0132969953 CDKN1A
## GO:0000786       1/3 135/19894 0.0202210709 0.044901762 0.0141795038   TGM2
## GO:1902554       1/3 136/19894 0.0203698303 0.044901762 0.0141795038 CDKN1A
## GO:1902911       1/3 150/19894 0.0224508810 0.044901762 0.0141795038 CDKN1A
##            Count
## GO:0070557     1
## GO:0000307     1
## GO:0000786     1
## GO:1902554     1
## GO:1902911     1
##                    ID                             Description GeneRatio
## GO:0120283 GO:0120283 protein serine/threonine kinase binding      2/17
## GO:0005178 GO:0005178                        integrin binding      3/17
## GO:0043394 GO:0043394                    proteoglycan binding      2/17
## GO:0003925 GO:0003925                      G protein activity      2/17
## GO:0030374 GO:0030374   nuclear receptor coactivator activity      2/17
## GO:0005518 GO:0005518                        collagen binding      2/17
##              BgRatio       pvalue    p.adjust      qvalue         geneID Count
## GO:0120283   7/18522 1.660593e-05 0.002391254 0.001013836     XIAP/MAPK8     2
## GO:0005178 157/18522 3.723281e-04 0.022018344 0.009335263 PTK2/ITGA2/FN1     3
## GO:0043394  36/18522 4.904396e-04 0.022018344 0.009335263      ITGA2/FN1     2
## GO:0003925  45/18522 7.669576e-04 0.022018344 0.009335263      KRAS/NRAS     2
## GO:0030374  55/18522 1.144248e-03 0.022018344 0.009335263     ETS1/NCOA3     2
## GO:0005518  68/18522 1.743022e-03 0.022018344 0.009335263      ITGA2/FN1     2
##                    ID                                         Description
## GO:0051402 GO:0051402                            neuron apoptotic process
## GO:2000045 GO:2000045 regulation of G1/S transition of mitotic cell cycle
## GO:1902806 GO:1902806      regulation of cell cycle G1/S phase transition
## GO:0007044 GO:0007044                    cell-substrate junction assembly
## GO:0000082 GO:0000082               G1/S transition of mitotic cell cycle
## GO:0150115 GO:0150115                cell-substrate junction organization
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0051402      6/17 292/18888 1.390911e-07 0.0001708038 8.784699e-05
## GO:2000045      5/17 185/18888 4.803076e-07 0.0002949089 1.516761e-04
## GO:1902806      5/17 211/18888 9.204379e-07 0.0003763699 1.935727e-04
## GO:0007044      4/17  96/18888 1.417572e-06 0.0003763699 1.935727e-04
## GO:0000082      5/17 234/18888 1.532451e-06 0.0003763699 1.935727e-04
## GO:0150115      4/17 103/18888 1.879404e-06 0.0003846513 1.978320e-04
##                                  geneID Count
## GO:0051402 XIAP/BID/KRAS/ATM/CCND1/G6PD     6
## GO:2000045    ARID1A/BID/PTEN/ATM/CCND1     5
## GO:1902806    ARID1A/BID/PTEN/ATM/CCND1     5
## GO:0007044          PTEN/PTK2/ITGA2/FN1     4
## GO:0000082    ARID1A/BID/PTEN/ATM/CCND1     5
## GO:0150115          PTEN/PTK2/ITGA2/FN1     4
##                    ID                         Description GeneRatio   BgRatio
## GO:0009898 GO:0009898 cytoplasmic side of plasma membrane      3/17 161/19894
## GO:0098562 GO:0098562        cytoplasmic side of membrane      3/17 199/19894
## GO:0097128 GO:0097128              cyclin D1-CDK4 complex      1/17   2/19894
## GO:0034666 GO:0034666       integrin alpha2-beta1 complex      1/17   3/19894
## GO:0016324 GO:0016324              apical plasma membrane      3/17 402/19894
## GO:0035749 GO:0035749       myelin sheath adaxonal region      1/17   6/19894
##                  pvalue   p.adjust     qvalue          geneID Count
## GO:0009898 0.0003254665 0.02387945 0.01559085  PTEN/KRAS/G6PD     3
## GO:0098562 0.0006045430 0.02387945 0.01559085  PTEN/KRAS/G6PD     3
## GO:0097128 0.0017083707 0.04498710 0.02937199           CCND1     1
## GO:0034666 0.0025615256 0.04808042 0.03139161           ITGA2     1
## GO:0016324 0.0045109740 0.04808042 0.03139161 PTEN/IGFBP2/FN1     3
## GO:0035749 0.0051168749 0.04808042 0.03139161            PTEN     1
##                    ID
## GO:0140297 GO:0140297
## GO:0097718 GO:0097718
## GO:0061629 GO:0061629
## GO:0120283 GO:0120283
## GO:0003713 GO:0003713
## GO:0031625 GO:0031625
##                                                                    Description
## GO:0140297                            DNA-binding transcription factor binding
## GO:0097718                                  disordered domain specific binding
## GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding
## GO:0120283                             protein serine/threonine kinase binding
## GO:0003713                                  transcription coactivator activity
## GO:0031625                                    ubiquitin protein ligase binding
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0140297      6/13 478/18522 4.212624e-07 4.844518e-05 1.818080e-05
## GO:0097718      3/13  32/18522 1.324045e-06 7.613260e-05 2.857150e-05
## GO:0061629      5/13 343/18522 2.409607e-06 9.236828e-05 3.466453e-05
## GO:0120283      2/13   7/18522 9.530849e-06 2.740119e-04 1.028328e-04
## GO:0003713      4/13 271/18522 2.888346e-05 6.643195e-04 2.493099e-04
## GO:0031625      4/13 305/18522 4.584195e-05 8.786374e-04 3.297404e-04
##                                        geneID Count
## GO:0140297 RB1/ETS1/ARID1A/YWHAZ/NCOA3/CTNNB1     6
## GO:0097718                   RB1/NCOA3/CTNNB1     3
## GO:0061629       RB1/ETS1/ARID1A/NCOA3/CTNNB1     5
## GO:0120283                         XIAP/MAPK8     2
## GO:0003713           ETS1/ARID1A/NCOA3/CTNNB1     4
## GO:0031625               RB1/BID/YWHAZ/CTNNB1     4
##                    ID                                         Description
## GO:0051402 GO:0051402                            neuron apoptotic process
## GO:2000045 GO:2000045 regulation of G1/S transition of mitotic cell cycle
## GO:0030099 GO:0030099                        myeloid cell differentiation
## GO:1902806 GO:1902806      regulation of cell cycle G1/S phase transition
## GO:0000082 GO:0000082               G1/S transition of mitotic cell cycle
## GO:0002573 GO:0002573                   myeloid leukocyte differentiation
##            GeneRatio   BgRatio       pvalue    p.adjust       qvalue
## GO:0051402      5/13 292/18888 9.922177e-07 0.001120214 0.0004783534
## GO:2000045      4/13 185/18888 5.945103e-06 0.002752834 0.0011755143
## GO:0030099      5/13 439/18888 7.314882e-06 0.002752834 0.0011755143
## GO:1902806      4/13 211/18888 1.000067e-05 0.002822690 0.0012053442
## GO:0000082      4/13 234/18888 1.503686e-05 0.003074891 0.0013130390
## GO:0002573      4/13 239/18888 1.634132e-05 0.003074891 0.0013130390
##                               geneID Count
## GO:0051402 RB1/XIAP/BID/CTNNB1/CCND1     5
## GO:2000045      RB1/ARID1A/BID/CCND1     4
## GO:0030099 RB1/ETS1/GAB2/CTNNB1/FASN     5
## GO:1902806      RB1/ARID1A/BID/CCND1     4
## GO:0000082      RB1/ARID1A/BID/CCND1     4
## GO:0002573      RB1/GAB2/CTNNB1/FASN     4
##                    ID                                        Description
## GO:0016514 GO:0016514                                    SWI/SNF complex
## GO:0000307 GO:0000307 cyclin-dependent protein kinase holoenzyme complex
## GO:0017053 GO:0017053                    transcription repressor complex
## GO:0034750 GO:0034750                     Scrib-APC-beta-catenin complex
## GO:0097128 GO:0097128                             cyclin D1-CDK4 complex
## GO:1990711 GO:1990711                          beta-catenin-ICAT complex
##            GeneRatio  BgRatio       pvalue   p.adjust      qvalue       geneID
## GO:0016514      2/13 30/19894 0.0001697103 0.01764987 0.007860266   RB1/ARID1A
## GO:0000307      2/13 56/19894 0.0005950830 0.01971858 0.008781556    RB1/CCND1
## GO:0017053      2/13 77/19894 0.0011219415 0.01971858 0.008781556 CTNNB1/CCND1
## GO:0034750      1/13  2/19894 0.0013065325 0.01971858 0.008781556       CTNNB1
## GO:0097128      1/13  2/19894 0.0013065325 0.01971858 0.008781556        CCND1
## GO:1990711      1/13  2/19894 0.0013065325 0.01971858 0.008781556       CTNNB1
##            Count
## GO:0016514     2
## GO:0000307     2
## GO:0017053     2
## GO:0034750     1
## GO:0097128     1
## GO:1990711     1
##                    ID                              Description GeneRatio
## GO:0005178 GO:0005178                         integrin binding      4/25
## GO:0106310 GO:0106310           protein serine kinase activity      5/25
## GO:0004707 GO:0004707                      MAP kinase activity      2/25
## GO:0004674 GO:0004674 protein serine/threonine kinase activity      5/25
## GO:0070064 GO:0070064              proline-rich region binding      2/25
## GO:0042826 GO:0042826              histone deacetylase binding      3/25
##              BgRatio       pvalue    p.adjust      qvalue
## GO:0005178 157/18522 5.470368e-05 0.008786504 0.003808392
## GO:0106310 363/18522 1.081824e-04 0.008786504 0.003808392
## GO:0004707  16/18522 2.074657e-04 0.008786504 0.003808392
## GO:0004674 427/18522 2.308630e-04 0.008786504 0.003808392
## GO:0070064  17/18522 2.349333e-04 0.008786504 0.003808392
## GO:0042826 128/18522 6.634074e-04 0.020676198 0.008961819
##                               geneID Count
## GO:0005178       MYH9/PTK2/ITGA2/FN1     4
## GO:0106310 AKT1/MTOR/MAPK8/ATM/MAPK1     5
## GO:0004707               MAPK8/MAPK1     2
## GO:0004674 AKT1/MTOR/MAPK8/ATM/MAPK1     5
## GO:0070064                CCND1/YAP1     2
## GO:0042826        HSPA1A/MAPK8/CCND1     3
##                    ID                           Description GeneRatio   BgRatio
## GO:0001667 GO:0001667         ameboidal-type cell migration     10/25 498/18888
## GO:0010631 GO:0010631             epithelial cell migration      9/25 375/18888
## GO:0090132 GO:0090132                  epithelium migration      9/25 378/18888
## GO:0090130 GO:0090130                      tissue migration      9/25 383/18888
## GO:0062197 GO:0062197  cellular response to chemical stress      8/25 311/18888
## GO:0071214 GO:0071214 cellular response to abiotic stimulus      8/25 334/18888
##                  pvalue     p.adjust       qvalue
## GO:0001667 3.401019e-10 4.073661e-07 1.676456e-07
## GO:0010631 6.722030e-10 4.073661e-07 1.676456e-07
## GO:0090132 7.210613e-10 4.073661e-07 1.676456e-07
## GO:0090130 8.094706e-10 4.073661e-07 1.676456e-07
## GO:0062197 4.187089e-09 1.685722e-06 6.937345e-07
## GO:0071214 7.318853e-09 2.104693e-06 8.661560e-07
##                                                         geneID Count
## GO:0001667 AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/ITGA2/ANLN/FN1    10
## GO:0010631     AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/ITGA2/ANLN     9
## GO:0090132     AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/ITGA2/ANLN     9
## GO:0090130     AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/ITGA2/ANLN     9
## GO:0062197         HSPA1A/AKT1/MTOR/MAPK8/FOXO3/ATM/MAPK1/G6PD     8
## GO:0071214         MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/YAP1/ITGA2     8
##                    ID                         Description GeneRatio   BgRatio
## GO:0005925 GO:0005925                      focal adhesion      7/25 421/19894
## GO:0030055 GO:0030055             cell-substrate junction      7/25 431/19894
## GO:0005826 GO:0005826         actomyosin contractile ring      2/25   4/19894
## GO:0009898 GO:0009898 cytoplasmic side of plasma membrane      4/25 161/19894
## GO:0070938 GO:0070938                    contractile ring      2/25  10/19894
## GO:0098562 GO:0098562        cytoplasmic side of membrane      4/25 199/19894
##                  pvalue     p.adjust       qvalue
## GO:0005925 6.252929e-07 0.0000483075 2.735114e-05
## GO:0030055 7.319319e-07 0.0000483075 2.735114e-05
## GO:0005826 9.082603e-06 0.0003996345 2.262684e-04
## GO:0009898 4.578147e-05 0.0015107886 8.553907e-04
## GO:0070938 6.780516e-05 0.0017900563 1.013509e-03
## GO:0098562 1.042248e-04 0.0022929450 1.298238e-03
##                                            geneID Count
## GO:0005925 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0030055 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0005826                              MYH9/ANLN     2
## GO:0009898                    MYH9/PTEN/KRAS/G6PD     4
## GO:0070938                              MYH9/ANLN     2
## GO:0098562                    MYH9/PTEN/KRAS/G6PD     4
##                    ID
## GO:0140297 GO:0140297
## GO:0001221 GO:0001221
## GO:0019902 GO:0019902
## GO:0016538 GO:0016538
## GO:0019887 GO:0019887
## GO:0106310 GO:0106310
##                                                                    Description
## GO:0140297                            DNA-binding transcription factor binding
## GO:0001221                                   transcription coregulator binding
## GO:0019902                                                 phosphatase binding
## GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity
## GO:0019887                                   protein kinase regulator activity
## GO:0106310                                      protein serine kinase activity
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0140297     10/42 478/18522 8.369349e-08 2.402003e-05 1.030751e-05
## GO:0001221      6/42 114/18522 2.084959e-07 2.991917e-05 1.283896e-05
## GO:0019902      6/42 189/18522 4.029967e-06 3.498304e-04 1.501198e-04
## GO:0016538      4/42  50/18522 4.875685e-06 3.498304e-04 1.501198e-04
## GO:0019887      6/42 232/18522 1.302402e-05 6.850613e-04 2.939746e-04
## GO:0106310      7/42 363/18522 1.566342e-05 6.850613e-04 2.939746e-04
##                                                           geneID Count
## GO:0140297 ESR1/BCL2/VHL/ETS1/PARP1/STAT5A/MYC/YAP1/CTNNB1/GATA3    10
## GO:0001221                      ESR1/FOXO3/ETS1/MYC/CTNNB1/GATA3     6
## GO:0019902                      MET/BCL2/MAPK8/PTK2/MAPK1/CTNNB1     6
## GO:0016538                              CCND1/CDKN1A/CCNE2/CASP3     4
## GO:0019887                  CCND1/AKT1/CDKN1A/CCNE2/CASP3/PIK3CA     6
## GO:0106310                AKT1/MTOR/MAPK8/ATM/CHEK1/PIK3CA/MAPK1     7
##                    ID                                 Description GeneRatio
## GO:0071214 GO:0071214       cellular response to abiotic stimulus     15/42
## GO:0104004 GO:0104004 cellular response to environmental stimulus     15/42
## GO:0043523 GO:0043523      regulation of neuron apoptotic process     13/42
## GO:0048732 GO:0048732                           gland development     15/42
## GO:0051402 GO:0051402                    neuron apoptotic process     13/42
## GO:0010631 GO:0010631                   epithelial cell migration     13/42
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0071214 334/18888 2.422177e-16 3.542434e-13 1.393389e-13
## GO:0104004 334/18888 2.422177e-16 3.542434e-13 1.393389e-13
## GO:0043523 244/18888 3.707763e-15 3.615069e-12 1.421960e-12
## GO:0048732 449/18888 1.902889e-14 1.391488e-11 5.473310e-12
## GO:0051402 292/18888 3.771394e-14 2.206265e-11 8.678175e-12
## GO:0010631 375/18888 9.185809e-13 4.245967e-10 1.670118e-10
##                                                                                            geneID
## GO:0071214   IGF1R/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PARP1/MYC/CASP3/YAP1/CHEK1/ITGA2/PIK3CA/GATA3
## GO:0104004   IGF1R/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PARP1/MYC/CASP3/YAP1/CHEK1/ITGA2/PIK3CA/GATA3
## GO:0043523           G6PD/BCL2/KRAS/CCND1/FOXO3/ATM/CASP8/PARP1/CASP3/BCL2L11/PIK3CA/CTNNB1/GATA3
## GO:0048732 ESR1/MET/BCL2/CCND1/AKT1/ATM/STAT5A/BCL2L11/ITGA2/PIK3CA/MAPK1/SRSF1/CTNNB1/TGM2/GATA3
## GO:0051402           G6PD/BCL2/KRAS/CCND1/FOXO3/ATM/CASP8/PARP1/CASP3/BCL2L11/PIK3CA/CTNNB1/GATA3
## GO:0010631                 MET/AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/RAB25/STAT5A/ITGA2/PIK3CA/ANLN/GATA3
##            Count
## GO:0071214    15
## GO:0104004    15
## GO:0043523    13
## GO:0048732    15
## GO:0051402    13
## GO:0010631    13
##                    ID                                       Description
## GO:0005925 GO:0005925                                    focal adhesion
## GO:0030055 GO:0030055                           cell-substrate junction
## GO:0090571 GO:0090571 RNA polymerase II transcription repressor complex
## GO:0005741 GO:0005741                      mitochondrial outer membrane
## GO:0031968 GO:0031968                          organelle outer membrane
## GO:0019867 GO:0019867                                    outer membrane
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925      8/42 421/19894 2.364807e-06 0.0002594590 0.0001413609
## GO:0030055      8/42 431/19894 2.814238e-06 0.0002594590 0.0001413609
## GO:0090571      3/42  15/19894 3.911442e-06 0.0002594590 0.0001413609
## GO:0005741      6/42 219/19894 6.261413e-06 0.0003115053 0.0001697172
## GO:0031968      6/42 248/19894 1.272480e-05 0.0004417170 0.0002406604
## GO:0019867      6/42 250/19894 1.331810e-05 0.0004417170 0.0002406604
##                                                   geneID Count
## GO:0005925 KRAS/HSPA1A/MYH9/PTK2/ITGA2/MAPK1/CTNNB1/TGM2     8
## GO:0030055 KRAS/HSPA1A/MYH9/PTK2/ITGA2/MAPK1/CTNNB1/TGM2     8
## GO:0090571                              FOXO3/MYC/CTNNB1     3
## GO:0005741            BCL2/KRAS/MTOR/FOXO3/CASP8/BCL2L11     6
## GO:0031968            BCL2/KRAS/MTOR/FOXO3/CASP8/BCL2L11     6
## GO:0019867            BCL2/KRAS/MTOR/FOXO3/CASP8/BCL2L11     6
##                    ID
## GO:0120283 GO:0120283
## GO:0003713 GO:0003713
## GO:0030374 GO:0030374
## GO:0061629 GO:0061629
## GO:0016410 GO:0016410
## GO:0140297 GO:0140297
##                                                                    Description
## GO:0120283                             protein serine/threonine kinase binding
## GO:0003713                                  transcription coactivator activity
## GO:0030374                               nuclear receptor coactivator activity
## GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding
## GO:0016410                                          N-acyltransferase activity
## GO:0140297                            DNA-binding transcription factor binding
##            GeneRatio   BgRatio       pvalue    p.adjust       qvalue
## GO:0120283       2/8   7/18522 3.424411e-06 0.000232860 9.732538e-05
## GO:0003713       3/8 271/18522 1.642917e-04 0.005432205 2.270426e-03
## GO:0030374       2/8  55/18522 2.396561e-04 0.005432205 2.270426e-03
## GO:0061629       3/8 343/18522 3.290146e-04 0.005593248 2.337735e-03
## GO:0016410       2/8  95/18522 7.143770e-04 0.009715527 4.060669e-03
## GO:0140297       3/8 478/18522 8.683135e-04 0.009840887 4.113064e-03
##                       geneID Count
## GO:0120283        XIAP/MAPK8     2
## GO:0003713 ETS1/ARID1A/NCOA3     3
## GO:0030374        ETS1/NCOA3     2
## GO:0061629 ETS1/ARID1A/NCOA3     3
## GO:0016410        NCOA3/TGM2     2
## GO:0140297 ETS1/ARID1A/NCOA3     3
##                    ID                                              Description
## GO:1902459 GO:1902459  positive regulation of stem cell population maintenance
## GO:0030522 GO:0030522                 intracellular receptor signaling pathway
## GO:2000036 GO:2000036           regulation of stem cell population maintenance
## GO:0018277 GO:0018277                                      protein deamination
## GO:1902528 GO:1902528          regulation of protein linear polyubiquitination
## GO:1902530 GO:1902530 positive regulation of protein linear polyubiquitination
##            GeneRatio   BgRatio       pvalue   p.adjust     qvalue
## GO:1902459       2/8  48/18888 0.0001753538 0.04414629 0.02178271
## GO:0030522       3/8 369/18888 0.0003850393 0.04414629 0.02178271
## GO:2000036       2/8  73/18888 0.0004063778 0.04414629 0.02178271
## GO:0018277       1/8   2/18888 0.0008469417 0.04414629 0.02178271
## GO:1902528       1/8   2/18888 0.0008469417 0.04414629 0.02178271
## GO:1902530       1/8   2/18888 0.0008469417 0.04414629 0.02178271
##                       geneID Count
## GO:1902459      ARID1A/NCOA3     2
## GO:0030522 XIAP/MAPK8/ARID1A     3
## GO:2000036      ARID1A/NCOA3     2
## GO:0018277              TGM2     1
## GO:1902528              XIAP     1
## GO:1902530              XIAP     1
##                    ID     Description GeneRatio  BgRatio      pvalue   p.adjust
## GO:0097441 GO:0097441  basal dendrite       1/8  6/19894 0.002410666 0.02181829
## GO:0140092 GO:0140092    bBAF complex       1/8 10/19894 0.004014950 0.02181829
## GO:0035060 GO:0035060  brahma complex       1/8 14/19894 0.005616977 0.02181829
## GO:0071564 GO:0071564   npBAF complex       1/8 14/19894 0.005616977 0.02181829
## GO:0071565 GO:0071565    nBAF complex       1/8 16/19894 0.006417144 0.02181829
## GO:0016514 GO:0016514 SWI/SNF complex       1/8 30/19894 0.012002558 0.03400725
##                qvalue geneID Count
## GO:0097441 0.01350978  MAPK8     1
## GO:0140092 0.01350978 ARID1A     1
## GO:0035060 0.01350978 ARID1A     1
## GO:0071564 0.01350978 ARID1A     1
## GO:0071565 0.01350978 ARID1A     1
## GO:0016514 0.02105712 ARID1A     1
##                    ID
## GO:0004345 GO:0004345
## GO:0005536 GO:0005536
## GO:0050661 GO:0050661
## GO:0048029 GO:0048029
## GO:0016616 GO:0016616
## GO:0016614 GO:0016614
##                                                                                      Description
## GO:0004345                                            glucose-6-phosphate dehydrogenase activity
## GO:0005536                                                                       glucose binding
## GO:0050661                                                                          NADP binding
## GO:0048029                                                                monosaccharide binding
## GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
## GO:0016614                              oxidoreductase activity, acting on CH-OH group of donors
##            GeneRatio   BgRatio       pvalue     p.adjust qvalue geneID Count
## GO:0004345       1/1   2/18522 0.0001079797 0.0007558579     NA   G6PD     1
## GO:0005536       1/1  11/18522 0.0005938883 0.0020786092     NA   G6PD     1
## GO:0050661       1/1  53/18522 0.0028614620 0.0066767448     NA   G6PD     1
## GO:0048029       1/1  74/18522 0.0039952489 0.0069916856     NA   G6PD     1
## GO:0016616       1/1 125/18522 0.0067487312 0.0085034014     NA   G6PD     1
## GO:0016614       1/1 135/18522 0.0072886297 0.0085034014     NA   G6PD     1
##                    ID
## GO:0010731 GO:0010731
## GO:0010732 GO:0010732
## GO:0010734 GO:0010734
## GO:0019322 GO:0019322
## GO:1904879 GO:1904879
## GO:0009051 GO:0009051
##                                                                                                  Description
## GO:0010731                                                                         protein glutathionylation
## GO:0010732                                                           regulation of protein glutathionylation
## GO:0010734                                                  negative regulation of protein glutathionylation
## GO:0019322                                                                      pentose biosynthetic process
## GO:1904879 positive regulation of calcium ion transmembrane transport via high voltage-gated calcium channel
## GO:0009051                                                         pentose-phosphate shunt, oxidative branch
##            GeneRatio BgRatio       pvalue    p.adjust qvalue geneID Count
## GO:0010731       1/1 2/18888 0.0001058873 0.003388395     NA   G6PD     1
## GO:0010732       1/1 2/18888 0.0001058873 0.003388395     NA   G6PD     1
## GO:0010734       1/1 2/18888 0.0001058873 0.003388395     NA   G6PD     1
## GO:0019322       1/1 2/18888 0.0001058873 0.003388395     NA   G6PD     1
## GO:1904879       1/1 3/18888 0.0001588310 0.003872451     NA   G6PD     1
## GO:0009051       1/1 4/18888 0.0002117747 0.003872451     NA   G6PD     1
##                    ID                         Description GeneRatio   BgRatio
## GO:0034451 GO:0034451                centriolar satellite       1/1 126/19894
## GO:0009898 GO:0009898 cytoplasmic side of plasma membrane       1/1 161/19894
## GO:0098562 GO:0098562        cytoplasmic side of membrane       1/1 199/19894
##                 pvalue   p.adjust qvalue geneID Count
## GO:0034451 0.006333568 0.01000302     NA   G6PD     1
## GO:0009898 0.008092892 0.01000302     NA   G6PD     1
## GO:0098562 0.010003016 0.01000302     NA   G6PD     1
## NULL
## NULL
## NULL
##                    ID                           Description GeneRatio   BgRatio
## GO:0043559 GO:0043559                       insulin binding       2/8   5/18522
## GO:0043560 GO:0043560    insulin receptor substrate binding       2/8  13/18522
## GO:0005158 GO:0005158              insulin receptor binding       2/8  22/18522
## GO:0043548 GO:0043548 phosphatidylinositol 3-kinase binding       2/8  25/18522
## GO:0017046 GO:0017046               peptide hormone binding       2/8  50/18522
## GO:0033218 GO:0033218                         amide binding       3/8 409/18522
##                  pvalue     p.adjust       qvalue            geneID Count
## GO:0043559 1.631377e-06 0.0001761887 6.182059e-05      PIK3R1/IGF1R     2
## GO:0043560 1.270277e-05 0.0006859494 2.406840e-04      PIK3R1/IGF1R     2
## GO:0005158 3.754665e-05 0.0013157179 4.616554e-04      PIK3R1/IGF1R     2
## GO:0043548 4.873029e-05 0.0013157179 4.616554e-04      PIK3R1/IGF1R     2
## GO:0017046 1.979099e-04 0.0042748535 1.499949e-03      PIK3R1/IGF1R     2
## GO:0033218 5.511240e-04 0.0049093069 1.722564e-03 PIK3R1/IGF1R/FASN     3
##                    ID                                           Description
## GO:0031099 GO:0031099                                          regeneration
## GO:0097421 GO:0097421                                    liver regeneration
## GO:0071353 GO:0071353                    cellular response to interleukin-4
## GO:0070670 GO:0070670                             response to interleukin-4
## GO:0033120 GO:0033120                   positive regulation of RNA splicing
## GO:0048009 GO:0048009 insulin-like growth factor receptor signaling pathway
##            GeneRatio   BgRatio       pvalue   p.adjust      qvalue
## GO:0031099       3/8 200/18888 6.298081e-05 0.01533276 0.006745377
## GO:0097421       2/8  30/18888 6.788160e-05 0.01533276 0.006745377
## GO:0071353       2/8  34/18888 8.746969e-05 0.01533276 0.006745377
## GO:0070670       2/8  37/18888 1.037750e-04 0.01533276 0.006745377
## GO:0033120       2/8  50/18888 1.903523e-04 0.01886635 0.008299917
## GO:0048009       2/8  53/18888 2.139908e-04 0.01886635 0.008299917
##                       geneID Count
## GO:0031099 CCND1/IGF1R/SRSF1     3
## GO:0097421       CCND1/SRSF1     2
## GO:0071353       TUBA1B/FASN     2
## GO:0070670       TUBA1B/FASN     2
## GO:0033120      PIK3R1/SRSF1     2
## GO:0048009      PIK3R1/IGF1R     2
##                    ID
## GO:0061695 GO:0061695
## GO:0097128 GO:0097128
## GO:1902911 GO:1902911
## GO:0005899 GO:0005899
## GO:0035867 GO:0035867
## GO:1990578 GO:1990578
##                                                               Description
## GO:0061695 transferase complex, transferring phosphorus-containing groups
## GO:0097128                                         cyclin D1-CDK4 complex
## GO:1902911                                         protein kinase complex
## GO:0005899                                       insulin receptor complex
## GO:0035867                      alphav-beta3 integrin-IGF-1-IGF1R complex
## GO:1990578                     perinuclear endoplasmic reticulum membrane
##            GeneRatio   BgRatio       pvalue    p.adjust      qvalue
## GO:0061695       3/8 308/19894 0.0001942755 0.008353845 0.003681009
## GO:0097128       1/8   2/19894 0.0008041211 0.011521680 0.005076873
## GO:1902911       2/8 150/19894 0.0015348825 0.011521680 0.005076873
## GO:0005899       1/8   4/19894 0.0016076763 0.011521680 0.005076873
## GO:0035867       1/8   4/19894 0.0016076763 0.011521680 0.005076873
## GO:1990578       1/8   4/19894 0.0016076763 0.011521680 0.005076873
##                        geneID Count
## GO:0061695 CCND1/PIK3R1/IGF1R     3
## GO:0097128              CCND1     1
## GO:1902911        CCND1/IGF1R     2
## GO:0005899              IGF1R     1
## GO:0035867              IGF1R     1
## GO:1990578             PIK3R1     1
##                    ID                           Description GeneRatio   BgRatio
## GO:0019903 GO:0019903           protein phosphatase binding      9/57 142/18522
## GO:0019902 GO:0019902                   phosphatase binding      9/57 189/18522
## GO:0140313 GO:0140313       molecular sequestering activity      6/57  49/18522
## GO:0031625 GO:0031625      ubiquitin protein ligase binding     10/57 305/18522
## GO:0044389 GO:0044389 ubiquitin-like protein ligase binding     10/57 324/18522
## GO:0001221 GO:0001221     transcription coregulator binding      7/57 114/18522
##                  pvalue     p.adjust       qvalue
## GO:0019903 4.664299e-10 1.641833e-07 7.610172e-08
## GO:0019902 5.845927e-09 9.599120e-07 4.449353e-07
## GO:0140313 8.181068e-09 9.599120e-07 4.449353e-07
## GO:0031625 2.756780e-08 2.425967e-06 1.124476e-06
## GO:0044389 4.869142e-08 3.342587e-06 1.549345e-06
## GO:0001221 5.697591e-08 3.342587e-06 1.549345e-06
##                                                               geneID Count
## GO:0019903         MET/BCL2/CDKN1B/MAPK8/PTK2/MAPT/EGFR/STAT3/CTNNB1     9
## GO:0019902         MET/BCL2/CDKN1B/MAPK8/PTK2/MAPT/EGFR/STAT3/CTNNB1     9
## GO:0140313                       YWHAZ/CDKN1A/CAV1/STAT3/SQSTM1/LCN2     6
## GO:0031625 BCL2/CDKN1B/JUN/BID/YWHAZ/CHEK2/CDKN1A/EGFR/SQSTM1/CTNNB1    10
## GO:0044389 BCL2/CDKN1B/JUN/BID/YWHAZ/CHEK2/CDKN1A/EGFR/SQSTM1/CTNNB1    10
## GO:0001221                     ESR1/MYC/EZH2/ETS1/FOXO3/GATA3/CTNNB1     7
##                    ID                                         Description
## GO:0032355 GO:0032355                               response to estradiol
## GO:0000082 GO:0000082               G1/S transition of mitotic cell cycle
## GO:2000045 GO:2000045 regulation of G1/S transition of mitotic cell cycle
## GO:0044772 GO:0044772                 mitotic cell cycle phase transition
## GO:0048872 GO:0048872                      homeostasis of number of cells
## GO:0044843 GO:0044843                    cell cycle G1/S phase transition
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0032355     12/57 115/18888 8.100857e-16 2.599565e-12 1.182725e-12
## GO:0000082     14/57 234/18888 6.519083e-15 8.973148e-12 4.082517e-12
## GO:2000045     13/57 185/18888 8.388733e-15 8.973148e-12 4.082517e-12
## GO:0044772     17/57 451/18888 1.148367e-14 9.212771e-12 4.191538e-12
## GO:0048872     15/57 322/18888 2.494598e-14 1.601033e-11 7.284227e-12
## GO:0044843     14/57 262/18888 3.118815e-14 1.668046e-11 7.589117e-12
##                                                                                                   geneID
## GO:0032355                      ESR1/ERRFI1/IGF1R/CDKN1B/EZH2/NCOA3/EGFR/CASP3/STAT3/IGFBP2/ITGA2/CTNNB1
## GO:0000082                   BCL2/CCND1/AKT1/PTEN/CDKN1B/MYC/EZH2/ARID1A/BID/ATM/CHEK2/CDKN1A/EGFR/CCNE2
## GO:2000045                       BCL2/CCND1/AKT1/PTEN/CDKN1B/EZH2/ARID1A/BID/ATM/CHEK2/CDKN1A/EGFR/CCNE2
## GO:0044772 BCL2/CCND1/AKT1/PTEN/CDKN1B/MYC/EZH2/ARID1A/BID/ATM/CHEK2/CDKN1A/EGFR/CHEK1/FOXM1/CCNE2/RAD50
## GO:0048872             BAP1/G6PD/BCL2/KRAS/AKT1/BCL2L11/EZH2/XIAP/ETS1/AXL/CASP3/ANXA1/FOXO3/STAT3/GATA3
## GO:0044843                   BCL2/CCND1/AKT1/PTEN/CDKN1B/MYC/EZH2/ARID1A/BID/ATM/CHEK2/CDKN1A/EGFR/CCNE2
##            Count
## GO:0032355    12
## GO:0000082    14
## GO:2000045    13
## GO:0044772    17
## GO:0048872    15
## GO:0044843    14
##                    ID                                       Description
## GO:0005925 GO:0005925                                    focal adhesion
## GO:0030055 GO:0030055                           cell-substrate junction
## GO:0070435 GO:0070435                                  Shc-EGFR complex
## GO:0090571 GO:0090571 RNA polymerase II transcription repressor complex
## GO:0045121 GO:0045121                                     membrane raft
## GO:0098857 GO:0098857                              membrane microdomain
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005925      9/57 421/19894 2.861306e-06 0.0003863119 0.0002388806
## GO:0030055      9/57 431/19894 3.464681e-06 0.0003863119 0.0002388806
## GO:0070435      2/57   2/19894 8.065671e-06 0.0005520325 0.0003413559
## GO:0090571      3/57  15/19894 9.901927e-06 0.0005520325 0.0003413559
## GO:0045121      7/57 286/19894 1.686241e-05 0.0006409717 0.0003963526
## GO:0098857      7/57 287/19894 1.724587e-05 0.0006409717 0.0003963526
##                                                       geneID Count
## GO:0005925 KRAS/SHC1/PTK2/YWHAZ/EGFR/CAV1/ANXA1/ITGA2/CTNNB1     9
## GO:0030055 KRAS/SHC1/PTK2/YWHAZ/EGFR/CAV1/ANXA1/ITGA2/CTNNB1     9
## GO:0070435                                         SHC1/EGFR     2
## GO:0090571                                  MYC/FOXO3/CTNNB1     3
## GO:0045121             IGF1R/IRS1/MAPT/EGFR/CAV1/GAB2/CTNNB1     7
## GO:0098857             IGF1R/IRS1/MAPT/EGFR/CAV1/GAB2/CTNNB1     7
##                    ID                              Description GeneRatio
## GO:0019902 GO:0019902                      phosphatase binding      5/32
## GO:0106310 GO:0106310           protein serine kinase activity      6/32
## GO:0030235 GO:0030235 nitric-oxide synthase regulator activity      2/32
## GO:0004674 GO:0004674 protein serine/threonine kinase activity      6/32
## GO:0019903 GO:0019903              protein phosphatase binding      4/32
## GO:0140297 GO:0140297 DNA-binding transcription factor binding      6/32
##              BgRatio       pvalue    p.adjust      qvalue
## GO:0019902 189/18522 1.689255e-05 0.003714311 0.001533586
## GO:0106310 363/18522 3.201993e-05 0.003714311 0.001533586
## GO:0030235   7/18522 6.039943e-05 0.004580884 0.001891382
## GO:0004674 427/18522 7.898077e-05 0.004580884 0.001891382
## GO:0019903 142/18522 1.007745e-04 0.004675937 0.001930627
## GO:0140297 478/18522 1.466379e-04 0.004750490 0.001961409
##                                     geneID Count
## GO:0019902       MET/BCL2/MAPK8/PTK2/MAPK1     5
## GO:0106310 AKT1/MTOR/MAPK8/ATM/CHEK1/MAPK1     6
## GO:0030235                       ESR1/AKT1     2
## GO:0004674 AKT1/MTOR/MAPK8/ATM/CHEK1/MAPK1     6
## GO:0019903             MET/BCL2/MAPK8/PTK2     4
## GO:0140297  ESR1/BCL2/VHL/ETS1/STAT5A/YAP1     6
##                    ID                                 Description GeneRatio
## GO:0071214 GO:0071214       cellular response to abiotic stimulus     10/32
## GO:0104004 GO:0104004 cellular response to environmental stimulus     10/32
## GO:0071496 GO:0071496      cellular response to external stimulus     10/32
## GO:0001667 GO:0001667               ameboidal-type cell migration     11/32
## GO:0010631 GO:0010631                   epithelial cell migration     10/32
## GO:0090132 GO:0090132                        epithelium migration     10/32
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0071214 334/18888 1.194244e-10 9.640605e-08 3.973773e-08
## GO:0104004 334/18888 1.194244e-10 9.640605e-08 3.973773e-08
## GO:0071496 335/18888 1.229669e-10 9.640605e-08 3.973773e-08
## GO:0001667 498/18888 2.999935e-10 1.523023e-07 6.277768e-08
## GO:0010631 375/18888 3.692513e-10 1.523023e-07 6.277768e-08
## GO:0090132 378/18888 3.989761e-10 1.523023e-07 6.277768e-08
##                                                                geneID Count
## GO:0071214    IGF1R/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/YAP1/CHEK1/ITGA2    10
## GO:0104004    IGF1R/MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/YAP1/CHEK1/ITGA2    10
## GO:0071496 BCL2/IGF1R/MTOR/MAPK8/CDKN1A/FOXO3/CASP8/CHEK1/ITGA2/MAPK1    10
## GO:0001667    MET/AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/FN1/ITGA2/ANLN    11
## GO:0010631        MET/AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/ITGA2/ANLN    10
## GO:0090132        MET/AKT1/MTOR/MYH9/PTEN/PTK2/ETS1/STAT5A/ITGA2/ANLN    10
##                    ID                  Description GeneRatio   BgRatio
## GO:0005925 GO:0005925               focal adhesion      7/32 421/19894
## GO:0030055 GO:0030055      cell-substrate junction      7/32 431/19894
## GO:0005826 GO:0005826  actomyosin contractile ring      2/32   4/19894
## GO:0005741 GO:0005741 mitochondrial outer membrane      5/32 219/19894
## GO:0031968 GO:0031968     organelle outer membrane      5/32 248/19894
## GO:0019867 GO:0019867               outer membrane      5/32 250/19894
##                  pvalue     p.adjust       qvalue
## GO:0005925 3.852358e-06 0.0003349071 0.0001750839
## GO:0030055 4.495397e-06 0.0003349071 0.0001750839
## GO:0005826 1.500952e-05 0.0007454729 0.0003897209
## GO:0005741 2.440940e-05 0.0009092502 0.0004753410
## GO:0031968 4.422395e-05 0.0011410129 0.0005965027
## GO:0019867 4.594683e-05 0.0011410129 0.0005965027
##                                            geneID Count
## GO:0005925 KRAS/HSPA1A/MYH9/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0030055 KRAS/HSPA1A/MYH9/PTK2/ITGA2/MAPK1/TGM2     7
## GO:0005826                              MYH9/ANLN     2
## GO:0005741             BCL2/KRAS/MTOR/FOXO3/CASP8     5
## GO:0031968             BCL2/KRAS/MTOR/FOXO3/CASP8     5
## GO:0019867             BCL2/KRAS/MTOR/FOXO3/CASP8     5
##                    ID
## GO:0031625 GO:0031625
## GO:0044389 GO:0044389
## GO:0019902 GO:0019902
## GO:0019903 GO:0019903
## GO:0016538 GO:0016538
## GO:0140297 GO:0140297
##                                                                    Description
## GO:0031625                                    ubiquitin protein ligase binding
## GO:0044389                               ubiquitin-like protein ligase binding
## GO:0019902                                                 phosphatase binding
## GO:0019903                                         protein phosphatase binding
## GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity
## GO:0140297                            DNA-binding transcription factor binding
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0031625     10/53 305/18522 1.319362e-08 4.128458e-06 1.809701e-06
## GO:0044389     10/53 324/18522 2.339069e-08 4.128458e-06 1.809701e-06
## GO:0019902      8/53 189/18522 6.065910e-08 7.137554e-06 3.128733e-06
## GO:0019903      7/53 142/18522 1.540591e-07 1.359572e-05 5.959654e-06
## GO:0016538      5/53  50/18522 3.038399e-07 2.145110e-05 9.403045e-06
## GO:0140297     10/53 478/18522 8.601058e-07 4.657057e-05 2.041412e-05
##                                                                 geneID Count
## GO:0031625 RB1/HSPA1A/BID/CDKN1A/CASP8/PARP1/TUBA1B/CDKN1B/BCL2/SQSTM1    10
## GO:0044389 RB1/HSPA1A/BID/CDKN1A/CASP8/PARP1/TUBA1B/CDKN1B/BCL2/SQSTM1    10
## GO:0019902                 MAPK8/PTK2/PIK3R1/CDKN1B/BCL2/MAPK1/MET/PXN     8
## GO:0019903                       MAPK8/PTK2/PIK3R1/CDKN1B/BCL2/MET/PXN     7
## GO:0016538                             CDKN1A/CCNE2/CCND1/CDKN1B/CASP3     5
## GO:0140297        RB1/VHL/ETS1/ARID1A/PARP1/STAT5A/BCL2/NCOA3/MYC/YAP1    10
##                    ID                                 Description GeneRatio
## GO:0071214 GO:0071214       cellular response to abiotic stimulus     16/53
## GO:0104004 GO:0104004 cellular response to environmental stimulus     16/53
## GO:0051402 GO:0051402                    neuron apoptotic process     14/53
## GO:0062197 GO:0062197        cellular response to chemical stress     14/53
## GO:0009411 GO:0009411                              response to UV     11/53
## GO:0030099 GO:0030099                myeloid cell differentiation     15/53
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0071214 334/18888 5.247375e-16 7.238754e-13 3.261658e-13
## GO:0104004 334/18888 5.247375e-16 7.238754e-13 3.261658e-13
## GO:0051402 292/18888 4.569850e-14 4.202739e-11 1.893682e-11
## GO:0062197 311/18888 1.085412e-13 7.486626e-11 3.373345e-11
## GO:0009411 154/18888 4.189669e-13 2.311859e-10 1.041684e-10
## GO:0030099 439/18888 6.861256e-13 3.155034e-10 1.421604e-10
##                                                                                                 geneID
## GO:0071214 MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PARP1/IGF1R/PIK3R1/CHEK1/MYC/CASP3/YAP1/ITGA2/PIK3CA/BRCA2
## GO:0104004 MTOR/MAPK8/CDKN1A/ATM/CASP8/PTEN/PARP1/IGF1R/PIK3R1/CHEK1/MYC/CASP3/YAP1/ITGA2/PIK3CA/BRCA2
## GO:0051402                RB1/XIAP/BID/FOXO3/ATM/CASP8/KRAS/PARP1/CCND1/BCL2L11/BCL2/CASP3/PIK3CA/G6PD
## GO:0062197                HSPA1A/AKT1/MTOR/MAPK8/FOXO3/ATM/PARP1/CASP3/PIK3CA/MAPK1/G6PD/MET/PXN/PRDX1
## GO:0009411                              AKT1/MAPK8/CDKN1A/PARP1/CCND1/PIK3R1/BCL2/MYC/CASP3/MSH6/BRCA2
## GO:0030099          RB1/HSPA1A/MTOR/ETS1/MYH9/FOXO3/CASP8/PARP1/PIK3R1/STAT5A/MYC/CASP3/GAB2/G6PD/FASN
##            Count
## GO:0071214    16
## GO:0104004    16
## GO:0051402    14
## GO:0062197    14
## GO:0009411    11
## GO:0030099    15
##                    ID
## GO:0005741 GO:0005741
## GO:0031968 GO:0031968
## GO:0019867 GO:0019867
## GO:0005925 GO:0005925
## GO:0000307 GO:0000307
## GO:0061695 GO:0061695
##                                                               Description
## GO:0005741                                   mitochondrial outer membrane
## GO:0031968                                       organelle outer membrane
## GO:0019867                                                 outer membrane
## GO:0005925                                                 focal adhesion
## GO:0000307             cyclin-dependent protein kinase holoenzyme complex
## GO:0061695 transferase complex, transferring phosphorus-containing groups
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0005741      7/53 219/19894 1.784906e-06 0.0002971311 0.0001654070
## GO:0031968      7/53 248/19894 4.064925e-06 0.0002971311 0.0001654070
## GO:0019867      7/53 250/19894 4.285544e-06 0.0002971311 0.0001654070
## GO:0005925      8/53 421/19894 1.449096e-05 0.0005099092 0.0002838564
## GO:0000307      4/53  56/19894 1.487873e-05 0.0005099092 0.0002838564
## GO:0061695      7/53 308/19894 1.667571e-05 0.0005099092 0.0002838564
##                                                geneID Count
## GO:0005741     MTOR/BID/FOXO3/CASP8/KRAS/BCL2L11/BCL2     7
## GO:0031968     MTOR/BID/FOXO3/CASP8/KRAS/BCL2L11/BCL2     7
## GO:0019867     MTOR/BID/FOXO3/CASP8/KRAS/BCL2L11/BCL2     7
## GO:0005925 HSPA1A/MYH9/KRAS/PTK2/ITGA2/MAPK1/TGM2/PXN     8
## GO:0000307                     RB1/CDKN1A/CCNE2/CCND1     4
## GO:0061695 RB1/CDKN1A/IGF1R/CCNE2/CCND1/PIK3R1/PIK3CA     7
##                    ID                                        Description
## GO:0140297 GO:0140297           DNA-binding transcription factor binding
## GO:0106310 GO:0106310                     protein serine kinase activity
## GO:0031625 GO:0031625                   ubiquitin protein ligase binding
## GO:0044389 GO:0044389              ubiquitin-like protein ligase binding
## GO:0004674 GO:0004674           protein serine/threonine kinase activity
## GO:0030291 GO:0030291 protein serine/threonine kinase inhibitor activity
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0140297     15/58 478/18522 1.296998e-11 4.046634e-09 1.870408e-09
## GO:0106310     11/58 363/18522 1.407083e-08 2.195050e-06 1.014581e-06
## GO:0031625     10/58 305/18522 3.283033e-08 3.414354e-06 1.578160e-06
## GO:0044389     10/58 324/18522 5.793200e-08 4.518696e-06 2.088601e-06
## GO:0004674     11/58 427/18522 7.387879e-08 4.610036e-06 2.130820e-06
## GO:0030291      5/58  37/18522 1.019178e-07 5.299728e-06 2.449604e-06
##                                                                                         geneID
## GO:0140297 RB1/VHL/ETS1/ARID1A/YWHAZ/STAT5A/NCOA3/E2F1/CDKN2A/YAP1/SMAD3/MAPK3/GATA3/CTNNB1/AR
## GO:0106310                         AKT1/MTOR/MAPK8/ATM/CHEK1/MAPK9/RAF1/AKT2/PRKCA/MAPK1/MAPK3
## GO:0031625                        RB1/HSPA1A/BID/CDKN1A/CASP8/YWHAZ/TUBA1B/SMAD3/CTNNB1/SQSTM1
## GO:0044389                        RB1/HSPA1A/BID/CDKN1A/CASP8/YWHAZ/TUBA1B/SMAD3/CTNNB1/SQSTM1
## GO:0004674                         AKT1/MTOR/MAPK8/ATM/CHEK1/MAPK9/RAF1/AKT2/PRKCA/MAPK1/MAPK3
## GO:0030291                                                     AKT1/CDKN1A/CDKN2A/AKT1S1/RPTOR
##            Count
## GO:0140297    15
## GO:0106310    11
## GO:0031625    10
## GO:0044389    10
## GO:0004674    11
## GO:0030291     5
##                    ID                                 Description GeneRatio
## GO:0030099 GO:0030099                myeloid cell differentiation     19/58
## GO:0071214 GO:0071214       cellular response to abiotic stimulus     16/58
## GO:0104004 GO:0104004 cellular response to environmental stimulus     16/58
## GO:0050673 GO:0050673               epithelial cell proliferation     17/58
## GO:0051402 GO:0051402                    neuron apoptotic process     14/58
## GO:0002573 GO:0002573           myeloid leukocyte differentiation     13/58
##              BgRatio       pvalue     p.adjust       qvalue
## GO:0030099 439/18888 2.547773e-17 7.625485e-14 3.320151e-14
## GO:0071214 334/18888 2.609427e-15 2.603338e-12 1.133498e-12
## GO:0104004 334/18888 2.609427e-15 2.603338e-12 1.133498e-12
## GO:0050673 482/18888 4.703462e-14 3.519365e-11 1.532338e-11
## GO:0051402 292/18888 1.799262e-13 1.077038e-10 4.689445e-11
## GO:0002573 239/18888 2.930195e-13 1.401679e-10 6.102936e-11
##                                                                                                                  geneID
## GO:0030099 RB1/HSPA1A/MTOR/ETS1/MYH9/FOXO3/CASP8/PIK3R1/STAT5A/CASP9/PRKCA/GAB2/GATA3/FASN/CTNNB1/RPTOR/G6PD/RBM15/TFRC
## GO:0071214                 MTOR/MAPK8/CDKN1A/ATM/CASP8/PIK3R1/CHEK1/IGF1R/PTEN/CASP9/AKT2/YAP1/BCL2L1/MAPK3/GATA3/RPTOR
## GO:0104004                 MTOR/MAPK8/CDKN1A/ATM/CASP8/PIK3R1/CHEK1/IGF1R/PTEN/CASP9/AKT2/YAP1/BCL2L1/MAPK3/GATA3/RPTOR
## GO:0050673               RB1/AKT1/BID/CDKN1A/CCND1/NRAS/STAT5A/RAF1/YAP1/BCL2L1/SMAD3/PRKCA/MAPK1/GATA3/CTNNB1/RPTOR/AR
## GO:0051402                                RB1/XIAP/BID/FOXO3/ATM/CASP8/CCND1/CASP9/AKT2/BCL2L1/AKT1S1/GATA3/CTNNB1/G6PD
## GO:0002573                                    RB1/MTOR/MYH9/CASP8/PIK3R1/STAT5A/PRKCA/GAB2/GATA3/FASN/CTNNB1/RPTOR/TFRC
##            Count
## GO:0030099    19
## GO:0071214    16
## GO:0104004    16
## GO:0050673    17
## GO:0051402    14
## GO:0002573    13
##                    ID                                        Description
## GO:0031931 GO:0031931                                      TORC1 complex
## GO:0038201 GO:0038201                                        TOR complex
## GO:0031143 GO:0031143                                       pseudopodium
## GO:0000307 GO:0000307 cyclin-dependent protein kinase holoenzyme complex
## GO:0005925 GO:0005925                                     focal adhesion
## GO:0005938 GO:0005938                                        cell cortex
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0031931      3/58   6/19894 4.674289e-07 0.0001177921 7.134441e-05
## GO:0038201      3/58  12/19894 5.078106e-06 0.0006398413 3.875396e-04
## GO:0031143      3/58  18/19894 1.860227e-05 0.0012155881 7.362585e-04
## GO:0000307      4/58  56/19894 2.133362e-05 0.0012155881 7.362585e-04
## GO:0005925      8/58 421/19894 2.857720e-05 0.0012155881 7.362585e-04
## GO:0005938      7/58 309/19894 3.108381e-05 0.0012155881 7.362585e-04
##                                                   geneID Count
## GO:0031931                             MTOR/AKT1S1/RPTOR     3
## GO:0038201                             MTOR/AKT1S1/RPTOR     3
## GO:0031143                              RAF1/MAPK1/MAPK3     3
## GO:0000307                        RB1/CDKN1A/CCND1/CCNE1     4
## GO:0005925 HSPA1A/MYH9/YWHAZ/MAPK1/MAPK3/CTNNB1/TGM2/PXN     8
## GO:0005938           AKT1/MYH9/AKT2/ANLN/CTNNB1/PXN/TSC1     7
barplot(ego_MF[[1]], title = "enrichGO, Molecular Function, Bicluster 1 of 1")

barplot(ego_MF[[2]], title = "enrichGO, Molecular Function, Bicluster 1 of 2")

barplot(ego_MF[[3]], title = "enrichGO, Molecular Function, Bicluster 2 of 2")

barplot(ego_MF[[4]], title = "enrichGO, Molecular Function, Bicluster 1 of 3")

barplot(ego_MF[[5]], title = "enrichGO, Molecular Function, Bicluster 2 of 3")

barplot(ego_MF[[6]], title = "enrichGO, Molecular Function, Bicluster 3 of 3")

barplot(ego_MF[[7]], title = "enrichGO, Molecular Function, Bicluster 1 of 5")

barplot(ego_MF[[8]], title = "enrichGO, Molecular Function, Bicluster 2 of 5")

barplot(ego_MF[[9]], title = "enrichGO, Molecular Function, Bicluster 3 of 5")

barplot(ego_MF[[10]], title = "enrichGO, Molecular Function, Bicluster 4 of 5")

barplot(ego_MF[[11]], title = "enrichGO, Molecular Function, Bicluster 5 of 5")

barplot(ego_MF[[12]], title = "enrichGO, Molecular Function, Bicluster 1 of 10")

barplot(ego_MF[[13]], title = "enrichGO, Molecular Function, Bicluster 2 of 10")

barplot(ego_MF[[14]], title = "enrichGO, Molecular Function, Bicluster 3 of 10")

barplot(ego_MF[[15]], title = "enrichGO, Molecular Function, Bicluster 4 of 10")

#barplot(ego_MF[[16]], title = "enrichGO, Molecular Function, Bicluster 5 of 10")
barplot(ego_MF[[17]], title = "enrichGO, Molecular Function, Bicluster 6 of 10")

barplot(ego_MF[[18]], title = "enrichGO, Molecular Function, Bicluster 7 of 10")

barplot(ego_MF[[19]], title = "enrichGO, Molecular Function, Bicluster 8 of 10")

barplot(ego_MF[[20]], title = "enrichGO, Molecular Function, Bicluster 9 of 10")

barplot(ego_MF[[21]], title = "enrichGO, Molecular Function, Bicluster 10 of 10")

barplot(ego_BP[[1]], title = "enrichGO, Biological Process, Bicluster 1 of 1")

barplot(ego_BP[[2]], title = "enrichGO, Biological Process, Bicluster 1 of 2")

barplot(ego_BP[[3]], title = "enrichGO, Biological Process, Bicluster 2 of 2")

barplot(ego_BP[[4]], title = "enrichGO, Biological Process, Bicluster 1 of 3")

barplot(ego_BP[[5]], title = "enrichGO, Biological Process, Bicluster 2 of 3")

barplot(ego_BP[[6]], title = "enrichGO, Biological Process, Bicluster 3 of 3")

barplot(ego_BP[[7]], title = "enrichGO, Biological Process, Bicluster 1 of 5")

barplot(ego_BP[[8]], title = "enrichGO, Biological Process, Bicluster 2 of 5")

barplot(ego_BP[[9]], title = "enrichGO, Biological Process, Bicluster 3 of 5")

barplot(ego_BP[[10]], title = "enrichGO, Biological Process, Bicluster 4 of 5")

barplot(ego_BP[[11]], title = "enrichGO, Biological Process, Bicluster 5 of 5")

barplot(ego_BP[[12]], title = "enrichGO, Biological Process, Bicluster 1 of 10")

barplot(ego_BP[[13]], title = "enrichGO, Biological Process, Bicluster 2 of 10")

barplot(ego_BP[[14]], title = "enrichGO, Biological Process, Bicluster 3 of 10")

barplot(ego_BP[[15]], title = "enrichGO, Biological Process, Bicluster 4 of 10")

#barplot(ego_BP[[16]], title = "enrichGO, Biological Process, Bicluster 5 of 10")
barplot(ego_BP[[17]], title = "enrichGO, Biological Process, Bicluster 6 of 10")

barplot(ego_BP[[18]], title = "enrichGO, Biological Process, Bicluster 7 of 10")

barplot(ego_BP[[19]], title = "enrichGO, Biological Process, Bicluster 8 of 10")

barplot(ego_BP[[20]], title = "enrichGO, Biological Process, Bicluster 9 of 10")

barplot(ego_BP[[21]], title = "enrichGO, Biological Process, Bicluster 10 of 10")

barplot(ego_CC[[1]], title = "enrichGO, Cellular Component, Bicluster 1 of 1")

barplot(ego_CC[[2]], title = "enrichGO, Cellular Component, Bicluster 1 of 2")

barplot(ego_CC[[3]], title = "enrichGO, Cellular Component, Bicluster 2 of 2")

barplot(ego_CC[[4]], title = "enrichGO, Cellular Component, Bicluster 1 of 3")

barplot(ego_CC[[5]], title = "enrichGO, Cellular Component, Bicluster 2 of 3")

barplot(ego_CC[[6]], title = "enrichGO, Cellular Component, Bicluster 3 of 3")

barplot(ego_CC[[7]], title = "enrichGO, Cellular Component, Bicluster 1 of 5")

barplot(ego_CC[[8]], title = "enrichGO, Cellular Component, Bicluster 2 of 5")

barplot(ego_CC[[9]], title = "enrichGO, Cellular Component, Bicluster 3 of 5")

barplot(ego_CC[[10]], title = "enrichGO, Cellular Component, Bicluster 4 of 5")

barplot(ego_CC[[11]], title = "enrichGO, Cellular Component, Bicluster 5 of 5")

barplot(ego_CC[[12]], title = "enrichGO, Cellular Component, Bicluster 1 of 10")

barplot(ego_CC[[13]], title = "enrichGO, Cellular Component, Bicluster 2 of 10")

barplot(ego_CC[[14]], title = "enrichGO, Cellular Component, Bicluster 3 of 10")

barplot(ego_CC[[15]], title = "enrichGO, Cellular Component, Bicluster 4 of 10")

#barplot(ego_CC[[16]], title = "enrichGO, Cellular Component, Bicluster 5 of 10")
barplot(ego_CC[[17]], title = "enrichGO, Cellular Component, Bicluster 6 of 10")

barplot(ego_CC[[18]], title = "enrichGO, Cellular Component, Bicluster 7 of 10")

barplot(ego_CC[[19]], title = "enrichGO, Cellular Component, Bicluster 8 of 10")

barplot(ego_CC[[20]], title = "enrichGO, Cellular Component, Bicluster 9 of 10")

barplot(ego_CC[[21]], title = "enrichGO, Cellular Component, Bicluster 10 of 10")

DAG plots for ego

goplot(ego_MF[[1]]) + labs(title = "enrichGO, Molecular Function, Bicluster 1 of 1")

goplot(ego_MF[[2]]) + labs(title = "enrichGO, Molecular Function, Bicluster 1 of 2")

goplot(ego_MF[[3]]) + labs(title = "enrichGO, Molecular Function, Bicluster 2 of 2")

goplot(ego_MF[[4]]) + labs(title = "enrichGO, Molecular Function, Bicluster 1 of 3")

goplot(ego_MF[[5]]) + labs(title = "enrichGO, Molecular Function, Bicluster 2 of 3")

goplot(ego_MF[[6]]) + labs(title = "enrichGO, Molecular Function, Bicluster 3 of 3")

goplot(ego_MF[[7]]) + labs(title = "enrichGO, Molecular Function, Bicluster 1 of 5")

goplot(ego_MF[[8]]) + labs(title = "enrichGO, Molecular Function, Bicluster 2 of 5")

goplot(ego_MF[[9]]) + labs(title = "enrichGO, Molecular Function, Bicluster 3 of 5")

goplot(ego_MF[[10]]) + labs(title = "enrichGO, Molecular Function, Bicluster 4 of 5")

goplot(ego_MF[[11]]) + labs(title = "enrichGO, Molecular Function, Bicluster 5 of 5")

goplot(ego_MF[[12]]) + labs(title = "enrichGO, Molecular Function, Bicluster 1 of 10")

goplot(ego_MF[[13]]) + labs(title = "enrichGO, Molecular Function, Bicluster 2 of 10")

goplot(ego_MF[[14]]) + labs(title = "enrichGO, Molecular Function, Bicluster 3 of 10")

goplot(ego_MF[[15]]) + labs(title = "enrichGO, Molecular Function, Bicluster 4 of 10")

#goplot(ego_MF[[16]]) + labs(title = "enrichGO, Molecular Function, Bicluster 5 of 10")
goplot(ego_MF[[17]]) + labs(title = "enrichGO, Molecular Function, Bicluster 6 of 10")

goplot(ego_MF[[18]]) + labs(title = "enrichGO, Molecular Function, Bicluster 7 of 10")

goplot(ego_MF[[19]]) + labs(title = "enrichGO, Molecular Function, Bicluster 8 of 10")

goplot(ego_MF[[20]]) + labs(title = "enrichGO, Molecular Function, Bicluster 9 of 10")

goplot(ego_MF[[21]]) + labs(title = "enrichGO, Molecular Function, Bicluster 10 of 10")

goplot(ego_BP[[1]]) + labs(title = "enrichGO, Biological Process, Bicluster 1 of 1")

goplot(ego_BP[[2]]) + labs(title = "enrichGO, Biological Process, Bicluster 1 of 2")

goplot(ego_BP[[3]]) + labs(title = "enrichGO, Biological Process, Bicluster 2 of 2")

goplot(ego_BP[[4]]) + labs(title = "enrichGO, Biological Process, Bicluster 1 of 3")

goplot(ego_BP[[5]]) + labs(title = "enrichGO, Biological Process, Bicluster 2 of 3")

goplot(ego_BP[[6]]) + labs(title = "enrichGO, Biological Process, Bicluster 3 of 3")

goplot(ego_BP[[7]]) + labs(title = "enrichGO, Biological Process, Bicluster 1 of 5")

goplot(ego_BP[[8]]) + labs(title = "enrichGO, Biological Process, Bicluster 2 of 5")

goplot(ego_BP[[9]]) + labs(title = "enrichGO, Biological Process, Bicluster 3 of 5")

goplot(ego_BP[[10]]) + labs(title = "enrichGO, Biological Process, Bicluster 4 of 5")

goplot(ego_BP[[11]]) + labs(title = "enrichGO, Biological Process, Bicluster 5 of 5")

goplot(ego_BP[[12]]) + labs(title = "enrichGO, Biological Process, Bicluster 1 of 10")

goplot(ego_BP[[13]]) + labs(title = "enrichGO, Biological Process, Bicluster 2 of 10")

goplot(ego_BP[[14]]) + labs(title = "enrichGO, Biological Process, Bicluster 3 of 10")
## Warning: ggrepel: 26 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[15]]) + labs(title = "enrichGO, Biological Process, Bicluster 4 of 10")
## Warning: ggrepel: 65 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

#goplot(ego_BP[[16]]) + labs(title = "enrichGO, Biological Process, Bicluster 5 of 10")
goplot(ego_BP[[17]]) + labs(title = "enrichGO, Biological Process, Bicluster 6 of 10")
## Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[18]]) + labs(title = "enrichGO, Biological Process, Bicluster 7 of 10")
## Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

goplot(ego_BP[[19]]) + labs(title = "enrichGO, Biological Process, Bicluster 8 of 10")

goplot(ego_BP[[20]]) + labs(title = "enrichGO, Biological Process, Bicluster 9 of 10")

goplot(ego_BP[[21]]) + labs(title = "enrichGO, Biological Process, Bicluster 10 of 10")

goplot(ego_CC[[1]]) + labs(title = "enrichGO, Cellular Component, Bicluster 1 of 1")

goplot(ego_CC[[2]]) + labs(title = "enrichGO, Cellular Component, Bicluster 1 of 2")

goplot(ego_CC[[3]]) + labs(title = "enrichGO, Cellular Component, Bicluster 2 of 2")

goplot(ego_CC[[4]]) + labs(title = "enrichGO, Cellular Component, Bicluster 1 of 3")

goplot(ego_CC[[5]]) + labs(title = "enrichGO, Cellular Component, Bicluster 2 of 3")

goplot(ego_CC[[6]]) + labs(title = "enrichGO, Cellular Component, Bicluster 3 of 3")

goplot(ego_CC[[7]]) + labs(title = "enrichGO, Cellular Component, Bicluster 1 of 5")

goplot(ego_CC[[8]]) + labs(title = "enrichGO, Cellular Component, Bicluster 2 of 5")

goplot(ego_CC[[9]]) + labs(title = "enrichGO, Cellular Component, Bicluster 3 of 5")

goplot(ego_CC[[10]]) + labs(title = "enrichGO, Cellular Component, Bicluster 4 of 5")

goplot(ego_CC[[11]]) + labs(title = "enrichGO, Cellular Component, Bicluster 5 of 5")

goplot(ego_CC[[12]]) + labs(title = "enrichGO, Cellular Component, Bicluster 1 of 10")

goplot(ego_CC[[13]]) + labs(title = "enrichGO, Cellular Component, Bicluster 2 of 10")

goplot(ego_CC[[14]]) + labs(title = "enrichGO, Cellular Component, Bicluster 3 of 10")

goplot(ego_CC[[15]]) + labs(title = "enrichGO, Cellular Component, Bicluster 4 of 10")

#goplot(ego_CC[[16]]) + labs(title = "enrichGO, Cellular Component, Bicluster 5 of 10")
goplot(ego_CC[[17]]) + labs(title = "enrichGO, Cellular Component, Bicluster 6 of 10")

goplot(ego_CC[[18]]) + labs(title = "enrichGO, Cellular Component, Bicluster 7 of 10")

goplot(ego_CC[[19]]) + labs(title = "enrichGO, Cellular Component, Bicluster 8 of 10")

goplot(ego_CC[[20]]) + labs(title = "enrichGO, Cellular Component, Bicluster 9 of 10")

goplot(ego_CC[[21]]) + labs(title = "enrichGO, Cellular Component, Bicluster 10 of 10")

3. Export Pathway Analysis result to data

pathway = list("ggo_MF" = ggo_MF,
               "ggo_BP" = ggo_BP,
               "ggo_CC" = ggo_CC,
               "ego_MF" = ego_MF,
               "ego_BP" = ego_BP,
               "ego_CC" = ego_CC)

saveRDS(pathway, file = "data/out_pathway/pathways_fabia_extracted_by_bic.rds")